Variant report

Variant	rs57367646
Chromosome Location	chr5:57780365-57780366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10035587	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10056043	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10071540	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10071783	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10074748	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10472062	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11739694	0.90[EUR][1000 genomes]
rs11741689	0.90[EUR][1000 genomes]
rs11745321	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11746501	0.95[EUR][1000 genomes]
rs11747268	0.95[EUR][1000 genomes]
rs11747708	0.95[EUR][1000 genomes]
rs11948189	0.90[EUR][1000 genomes]
rs11949753	0.90[EUR][1000 genomes]
rs11950095	0.91[EUR][1000 genomes]
rs11955212	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11958256	0.86[EUR][1000 genomes]
rs12173136	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12187683	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12188785	0.87[EUR][1000 genomes]
rs17773396	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2307117	0.93[ASN][1000 genomes]
rs4551014	0.95[ASN][1000 genomes]
rs57211722	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62366403	0.89[EUR][1000 genomes]
rs62366404	0.91[EUR][1000 genomes]
rs62366441	0.96[EUR][1000 genomes]
rs62366446	0.89[EUR][1000 genomes]
rs62366447	0.89[EUR][1000 genomes]
rs62366448	0.89[EUR][1000 genomes]
rs62367805	0.84[EUR][1000 genomes]
rs6865094	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6869174	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6889999	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6890117	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6890154	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6890362	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6891534	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6895777	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6895889	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73094379	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7712288	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7721366	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598246	chr5:57777623-57785273	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57773200-57785400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:57778200-57782800	Enhancers	Primary B cells from peripheral blood	blood
3	chr5:57779000-57780400	Enhancers	Primary B cells from cord blood	blood
4	chr5:57779000-57782400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr5:57779400-57783600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:57779800-57780400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr5:57780000-57781200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:57780200-57780400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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