Variant report

Variant	rs12187683
Chromosome Location	chr5:57777152-57777153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10035587	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10056043	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10071540	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10071783	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10074748	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10472062	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11739694	0.92[EUR][1000 genomes]
rs11741689	0.93[EUR][1000 genomes]
rs11745321	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11746501	0.97[EUR][1000 genomes]
rs11747268	0.97[EUR][1000 genomes]
rs11747708	0.97[EUR][1000 genomes]
rs11948189	0.92[EUR][1000 genomes]
rs11949753	0.92[EUR][1000 genomes]
rs11950095	0.93[EUR][1000 genomes]
rs11955212	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11958256	0.89[EUR][1000 genomes]
rs12173136	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12188785	0.87[EUR][1000 genomes]
rs17773396	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2307117	0.90[ASN][1000 genomes]
rs4551014	0.92[ASN][1000 genomes]
rs57211722	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57367646	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62366403	0.92[EUR][1000 genomes]
rs62366404	0.93[EUR][1000 genomes]
rs62366441	0.98[EUR][1000 genomes]
rs62366446	0.88[EUR][1000 genomes]
rs62366447	0.88[EUR][1000 genomes]
rs62366448	0.88[EUR][1000 genomes]
rs62367805	0.84[EUR][1000 genomes]
rs6865094	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6869174	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6889999	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6890117	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6890154	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6890362	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6891534	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6895777	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6895889	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73094379	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712288	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7721366	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405804	chr5:57774995-57779993	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
2	esv11510	chr5:57776769-57778784	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv820995	chr5:57776769-57778897	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv513241	chr5:57776969-57779389	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	esv3423189	chr5:57777045-57779543	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv2422993	chr5:57777076-57778801	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57773200-57785400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:57774200-57779000	Weak transcription	Primary B cells from cord blood	blood
3	chr5:57774200-57779400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:57774200-57780000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:57774400-57779000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:57776800-57778000	ZNF genes & repeats	Fetal Kidney	kidney
7	chr5:57776800-57778400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:57777000-57777400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:57777000-57777400	Enhancers	Gastric	stomach
10	chr5:57777000-57778200	Weak transcription	Primary B cells from peripheral blood	blood

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