Variant report

Variant	rs6890362
Chromosome Location	chr5:57785710-57785711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10035587	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10056043	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10071540	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10071783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10074748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10472062	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11739694	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11741689	0.92[EUR][1000 genomes]
rs11742549	0.95[CEU][hapmap]
rs11745321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11746501	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11747268	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11747708	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11948189	0.93[EUR][1000 genomes]
rs11949753	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11950095	0.93[EUR][1000 genomes]
rs11955212	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11958256	0.88[EUR][1000 genomes]
rs12173136	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12187683	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12188785	0.87[EUR][1000 genomes]
rs1422230	0.82[CHB][hapmap]
rs1605739	0.91[CEU][hapmap]
rs1605740	0.91[CEU][hapmap]
rs1605741	0.80[CHB][hapmap]
rs1605742	0.87[CHB][hapmap]
rs17712683	0.95[CEU][hapmap]
rs17712713	0.90[CEU][hapmap]
rs17712820	0.87[CHB][hapmap]
rs17773396	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2307117	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4551014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs57211722	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57367646	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62366403	0.92[EUR][1000 genomes]
rs62366404	0.93[EUR][1000 genomes]
rs62366441	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62366446	0.89[EUR][1000 genomes]
rs62366447	0.89[EUR][1000 genomes]
rs62366448	0.89[EUR][1000 genomes]
rs62367805	0.84[EUR][1000 genomes]
rs6865094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6869174	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6889999	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6890117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6890154	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890847	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs6891534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6895777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6895889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6896790	0.80[CHB][hapmap]
rs73094379	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7712288	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7721366	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7723416	0.87[CHB][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57783000-57785800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr5:57784800-57785800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:57784800-57786000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr5:57785000-57787000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr5:57785400-57785800	Enhancers	Primary B cells from cord blood	blood
6	chr5:57785400-57786400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:57785400-57786400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:57785400-57787200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:57785400-57787200	Enhancers	Primary B cells from peripheral blood	blood
10	chr5:57785600-57786400	Enhancers	Primary hematopoietic stem cells	blood

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