Variant report

Variant	rs17712713
Chromosome Location	chr5:57855677-57855678
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10035587	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs10056043	0.83[EUR][1000 genomes]
rs10071540	0.83[EUR][1000 genomes]
rs10071783	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs10074748	0.83[EUR][1000 genomes]
rs10472062	0.83[EUR][1000 genomes]
rs11739694	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11741689	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11742549	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs11745321	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs11746501	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747268	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747708	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948189	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949041	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949753	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11950095	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957466	1.00[ASN][1000 genomes]
rs11958256	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12173136	0.83[EUR][1000 genomes]
rs12187683	0.83[EUR][1000 genomes]
rs12188785	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12518781	1.00[ASN][1000 genomes]
rs13159762	1.00[ASN][1000 genomes]
rs13168504	1.00[ASN][1000 genomes]
rs13168895	1.00[ASN][1000 genomes]
rs13174477	1.00[ASN][1000 genomes]
rs13176857	1.00[CHB][hapmap]
rs13184050	0.85[ASN][1000 genomes]
rs15915	1.00[ASN][1000 genomes]
rs1605739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1605740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17709855	1.00[CHB][hapmap]
rs17712683	1.00[CEU][hapmap]
rs17773396	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700297	1.00[ASN][1000 genomes]
rs57367646	0.83[EUR][1000 genomes]
rs57844100	0.92[ASN][1000 genomes]
rs59598546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366360	1.00[ASN][1000 genomes]
rs62366396	1.00[ASN][1000 genomes]
rs62366397	1.00[ASN][1000 genomes]
rs62366400	1.00[ASN][1000 genomes]
rs62366401	1.00[ASN][1000 genomes]
rs62366402	1.00[ASN][1000 genomes]
rs62366403	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366404	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366441	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366446	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366447	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366448	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367805	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6865094	0.90[CEU][hapmap];0.86[GIH][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs6869174	0.83[EUR][1000 genomes]
rs6870990	1.00[ASN][1000 genomes]
rs6889999	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890117	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs6890154	0.83[EUR][1000 genomes]
rs6890362	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs6891534	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs6895777	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs6895889	0.90[CEU][hapmap];0.86[GIH][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs73094379	0.82[EUR][1000 genomes]
rs7721366	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs963615	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17712713	GAPT	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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