Variant report

Variant	rs4700297
Chromosome Location	chr5:57822482-57822483
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11739694	1.00[ASN][1000 genomes]
rs11741689	1.00[ASN][1000 genomes]
rs11742549	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11746501	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11747268	1.00[ASN][1000 genomes]
rs11747708	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11948189	1.00[ASN][1000 genomes]
rs11949041	1.00[ASN][1000 genomes]
rs11949753	1.00[ASN][1000 genomes]
rs11950095	1.00[ASN][1000 genomes]
rs11957466	1.00[ASN][1000 genomes]
rs11958256	1.00[ASN][1000 genomes]
rs12188785	1.00[ASN][1000 genomes]
rs12518781	1.00[ASN][1000 genomes]
rs13159762	1.00[ASN][1000 genomes]
rs13168504	1.00[ASN][1000 genomes]
rs13168895	1.00[ASN][1000 genomes]
rs13174477	1.00[ASN][1000 genomes]
rs13176857	1.00[CHB][hapmap]
rs13184050	0.85[ASN][1000 genomes]
rs1422230	0.85[CEU][hapmap]
rs15915	1.00[ASN][1000 genomes]
rs1605739	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1605740	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17709855	1.00[CHB][hapmap]
rs17712713	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17773396	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2307117	0.88[CEU][hapmap];0.86[GIH][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4551014	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs57844100	0.92[ASN][1000 genomes]
rs59598546	1.00[ASN][1000 genomes]
rs62366360	1.00[ASN][1000 genomes]
rs62366396	1.00[ASN][1000 genomes]
rs62366397	1.00[ASN][1000 genomes]
rs62366400	1.00[ASN][1000 genomes]
rs62366401	1.00[ASN][1000 genomes]
rs62366402	1.00[ASN][1000 genomes]
rs62366403	1.00[ASN][1000 genomes]
rs62366404	1.00[ASN][1000 genomes]
rs62366441	1.00[ASN][1000 genomes]
rs62366446	1.00[ASN][1000 genomes]
rs62366447	1.00[ASN][1000 genomes]
rs62366448	1.00[ASN][1000 genomes]
rs62367805	0.85[ASN][1000 genomes]
rs6870990	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879314	0.89[ASW][hapmap];0.84[MKK][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes]
rs6889999	1.00[ASN][1000 genomes]
rs6896790	0.88[CEU][hapmap]
rs7721366	0.92[ASN][1000 genomes]
rs7723416	0.85[CEU][hapmap]
rs963615	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4700297	FLJ33641	cis	multi-tissue	Pritchard

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57821200-57822600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:57821600-57822800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:57822000-57822600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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