Variant report

Variant	rs62366397
Chromosome Location	chr5:57763182-57763183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11739694	1.00[ASN][1000 genomes]
rs11741689	1.00[ASN][1000 genomes]
rs11746501	1.00[ASN][1000 genomes]
rs11747268	1.00[ASN][1000 genomes]
rs11747708	1.00[ASN][1000 genomes]
rs11948189	1.00[ASN][1000 genomes]
rs11949041	1.00[ASN][1000 genomes]
rs11949753	1.00[ASN][1000 genomes]
rs11950095	1.00[ASN][1000 genomes]
rs11957466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958256	1.00[ASN][1000 genomes]
rs11958495	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12188785	1.00[ASN][1000 genomes]
rs12518781	1.00[ASN][1000 genomes]
rs13159762	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13168504	1.00[ASN][1000 genomes]
rs13168895	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13174477	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13176857	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13184050	0.85[ASN][1000 genomes]
rs15915	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1605739	1.00[ASN][1000 genomes]
rs1605740	1.00[ASN][1000 genomes]
rs17773396	1.00[ASN][1000 genomes]
rs4700297	1.00[ASN][1000 genomes]
rs57844100	0.92[ASN][1000 genomes]
rs59598546	1.00[ASN][1000 genomes]
rs62366360	1.00[ASN][1000 genomes]
rs62366396	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366400	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366402	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366403	1.00[ASN][1000 genomes]
rs62366404	1.00[ASN][1000 genomes]
rs62366441	1.00[ASN][1000 genomes]
rs62366446	1.00[ASN][1000 genomes]
rs62366447	1.00[ASN][1000 genomes]
rs62366448	1.00[ASN][1000 genomes]
rs62367805	0.85[ASN][1000 genomes]
rs6870990	1.00[ASN][1000 genomes]
rs6889999	1.00[ASN][1000 genomes]
rs726842	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7721366	0.92[ASN][1000 genomes]
rs963615	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57757000-57763200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:57757000-57765600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:57758600-57763200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:57758600-57763200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:57758600-57763600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:57762600-57763200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:57762600-57763200	Enhancers	Dnd41	blood
8	chr5:57762600-57763200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:57762600-57763400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr5:57762600-57763400	Enhancers	A549	lung
11	chr5:57762800-57763200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:57762800-57763600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:57762800-57763800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr5:57762800-57763800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:57763000-57763600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr5:57763000-57771000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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