Variant report

Variant	rs726842
Chromosome Location	chr5:57740624-57740625
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57739641..57742111-chr5:57749437..57750937,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10513145	0.81[EUR][1000 genomes]
rs10805507	0.81[EUR][1000 genomes]
rs11739498	0.81[EUR][1000 genomes]
rs11740846	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11742549	1.00[CHB][hapmap]
rs11745514	0.82[EUR][1000 genomes]
rs11746501	1.00[CHB][hapmap]
rs11747708	1.00[CHB][hapmap]
rs11749794	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11953112	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs11957466	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11958495	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11959784	0.81[AMR][1000 genomes]
rs12522572	0.81[EUR][1000 genomes]
rs13159762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13166103	0.82[AMR][1000 genomes]
rs13168895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13174477	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13176857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13187020	0.82[EUR][1000 genomes]
rs13188849	1.00[ASN][1000 genomes]
rs1396503	0.81[EUR][1000 genomes]
rs15915	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1605739	1.00[CHB][hapmap]
rs1605740	1.00[CHB][hapmap]
rs17709263	0.81[EUR][1000 genomes]
rs17709855	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17712713	1.00[CHB][hapmap]
rs17766068	0.82[EUR][1000 genomes]
rs17766240	0.83[EUR][1000 genomes]
rs17773396	1.00[CHB][hapmap]
rs34415498	0.81[EUR][1000 genomes]
rs35345509	0.80[EUR][1000 genomes]
rs35917227	0.80[EUR][1000 genomes]
rs3914030	0.81[EUR][1000 genomes]
rs4699926	0.89[ASN][1000 genomes]
rs4700282	0.81[EUR][1000 genomes]
rs4700283	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs62366396	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62366397	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62366400	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62366401	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62366402	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62368176	0.81[EUR][1000 genomes]
rs62368203	0.80[EUR][1000 genomes]
rs62368206	0.81[EUR][1000 genomes]
rs6882289	1.00[ASN][1000 genomes]
rs719427	0.82[EUR][1000 genomes]
rs719429	0.82[EUR][1000 genomes]
rs7701530	1.00[ASN][1000 genomes]
rs963615	0.95[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
2	chr5:57737000-57747400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:57737400-57740800	Weak transcription	A549	lung
4	chr5:57737400-57747000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:57737800-57748600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:57737800-57749000	Weak transcription	Fetal Lung	lung
7	chr5:57740400-57742400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:57740400-57743000	Weak transcription	HSMM	muscle
9	chr5:57740600-57741200	Weak transcription	Esophagus	oesophagus
10	chr5:57740600-57741200	Enhancers	NHEK	skin

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