Variant report

Variant rs7717
Chromosome Location chr21:47549510-47549511
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:47530800-47563600 Weak transcription Right Atrium heart
2 chr21:47531800-47549600 Strong transcription Colon Smooth Muscle Colon
3 chr21:47531800-47550000 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
4 chr21:47535000-47554800 Weak transcription iPS-18 Cell Line embryonic stem cell
5 chr21:47535200-47549600 Strong transcription Adipose Nuclei Adipose
6 chr21:47535200-47551000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr21:47535200-47552000 Strong transcription Breast Myoepithelial Primary Cells Breast
8 chr21:47535200-47552000 Strong transcription NHLF lung
9 chr21:47535200-47552400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr21:47535200-47552800 Strong transcription Fetal Muscle Leg muscle
11 chr21:47535600-47551000 Strong transcription Fetal Intestine Small intestine
12 chr21:47538200-47563600 Weak transcription Brain Anterior Caudate brain
13 chr21:47539200-47549800 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr21:47539200-47550400 Weak transcription Duodenum Mucosa Duodenum
15 chr21:47542400-47552000 Weak transcription HSMM muscle
16 chr21:47542600-47551200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr21:47542600-47551400 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr21:47542600-47552400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr21:47542800-47550200 Strong transcription Muscle Satellite Cultured Cells --
20 chr21:47542800-47550600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr21:47542800-47552400 Strong transcription NHDF-Ad bronchial
22 chr21:47543600-47553800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr21:47544000-47553400 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
24 chr21:47544200-47553800 Strong transcription Osteobl bone
25 chr21:47544400-47550000 Strong transcription Placenta Amnion Placenta Amnion
26 chr21:47544600-47549600 Strong transcription iPS-15b Cell Line embryonic stem cell
27 chr21:47545000-47556200 Weak transcription HSMMtube muscle
28 chr21:47546000-47550800 Enhancers Fetal Heart heart
29 chr21:47546200-47556200 Weak transcription Fetal Lung lung
30 chr21:47546400-47551400 Weak transcription Rectal Smooth Muscle rectum
31 chr21:47546400-47552000 Weak transcription HUES64 Cell Line embryonic stem cell
32 chr21:47546800-47552000 Weak transcription Esophagus oesophagus
33 chr21:47547200-47549800 Genic enhancers Right Ventricle heart
34 chr21:47547600-47549600 Enhancers Left Ventricle heart
35 chr21:47547600-47550000 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin01 Skin
36 chr21:47547600-47558400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
37 chr21:47547800-47555000 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr21:47548000-47557200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr21:47548000-47563600 Weak transcription Gastric stomach
40 chr21:47548200-47549600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
41 chr21:47548200-47555000 Weak transcription H9 Cell Line embryonic stem cell
42 chr21:47548200-47557600 Weak transcription HUES6 Cell Line embryonic stem cell
43 chr21:47548400-47549600 Weak transcription Skeletal Muscle Male skeletal muscle
44 chr21:47548600-47549600 ZNF genes & repeats Fetal Intestine Large intestine
45 chr21:47548600-47550000 Strong transcription Ovary ovary
46 chr21:47548600-47550600 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
47 chr21:47548600-47550600 Strong transcription Fetal Muscle Trunk muscle
48 chr21:47548600-47552000 Weak transcription Liver Liver
49 chr21:47548800-47550400 Strong transcription Stomach Smooth Muscle stomach
50 chr21:47548800-47552600 Weak transcription Duodenum Smooth Muscle Duodenum

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