Variant report

Variant	rs7717705
Chromosome Location	chr5:127276173-127276174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127269084..127270706-chr5:127275651..127278152,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10040931	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10041355	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10041388	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10055964	0.80[EUR][1000 genomes]
rs1013374	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1013375	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10478786	0.92[EUR][1000 genomes]
rs10478787	0.92[EUR][1000 genomes]
rs11745009	0.91[EUR][1000 genomes]
rs11745023	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12523625	0.92[EUR][1000 genomes]
rs13161109	0.84[EUR][1000 genomes]
rs13174053	0.93[EUR][1000 genomes]
rs13180050	0.92[EUR][1000 genomes]
rs1558149	0.92[EUR][1000 genomes]
rs17606751	0.80[EUR][1000 genomes]
rs2041143	0.90[EUR][1000 genomes]
rs2108654	0.93[EUR][1000 genomes]
rs2159110	0.86[EUR][1000 genomes]
rs2409038	0.92[EUR][1000 genomes]
rs2409039	0.90[EUR][1000 genomes]
rs2409040	0.87[EUR][1000 genomes]
rs2898077	0.91[EUR][1000 genomes]
rs4835934	0.92[EUR][1000 genomes]
rs59634534	0.93[EUR][1000 genomes]
rs6881456	0.92[EUR][1000 genomes]
rs6892704	0.91[EUR][1000 genomes]
rs732235	0.91[EUR][1000 genomes]
rs732236	0.92[EUR][1000 genomes]
rs768528	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7713606	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127266600-127277000	Weak transcription	Aorta	Aorta
2	chr5:127267400-127292200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:127269800-127292400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:127271200-127276800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:127271200-127294800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:127271400-127276600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:127271400-127276800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:127271400-127277000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:127271600-127276800	Weak transcription	Fetal Intestine Small	intestine
10	chr5:127271600-127276800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:127271600-127277000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr5:127272400-127277400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:127272600-127276600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:127272600-127276600	Weak transcription	Small Intestine	intestine
15	chr5:127272600-127277000	Weak transcription	Stomach Mucosa	stomach
16	chr5:127272600-127277800	Weak transcription	NHEK	skin
17	chr5:127272800-127277800	Weak transcription	GM12878-XiMat	blood
18	chr5:127273000-127276600	Weak transcription	A549	lung
19	chr5:127274400-127287000	Weak transcription	Primary T cells from cord blood	blood
20	chr5:127274600-127276800	Weak transcription	Fetal Muscle Leg	muscle
21	chr5:127274800-127295000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:127274800-127296000	Weak transcription	Primary B cells from cord blood	blood

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