The 2.0 version of rSNPBase

Variant report

Variant rs10478786
Chromosome Location chr5:127292642-127292643
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:36 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:127271200-127294800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
2 chr5:127274800-127295000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
3 chr5:127274800-127296000 Weak transcription Primary B cells from cord blood blood
4 chr5:127278400-127292800 Weak transcription Brain Inferior Temporal Lobe brain
5 chr5:127278400-127292800 Weak transcription Brain Substantia Nigra brain
6 chr5:127278400-127292800 Weak transcription HSMM muscle
7 chr5:127278400-127294600 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr5:127278400-127295600 Weak transcription HSMMtube muscle
9 chr5:127280200-127292800 Weak transcription Gastric stomach
10 chr5:127281800-127295400 Weak transcription Psoas Muscle Psoas
11 chr5:127285200-127295200 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr5:127285800-127303800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr5:127286600-127295200 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr5:127287400-127293000 Weak transcription Rectal Smooth Muscle rectum
15 chr5:127287400-127297200 Weak transcription Primary B cells from peripheral blood blood
16 chr5:127287600-127292800 Weak transcription Colon Smooth Muscle Colon
17 chr5:127288200-127295200 Weak transcription Primary T cells from cord blood blood
18 chr5:127289000-127294600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr5:127290400-127294600 Weak transcription Primary hematopoietic stem cells blood
20 chr5:127290600-127332000 Weak transcription Aorta Aorta
21 chr5:127290800-127292800 Weak transcription Right Ventricle heart
22 chr5:127290800-127295400 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr5:127290800-127297400 Weak transcription Spleen Spleen
24 chr5:127291600-127295000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr5:127292200-127293000 Enhancers A549 lung
26 chr5:127292200-127294600 Enhancers Rectal Mucosa Donor 31 rectum
27 chr5:127292200-127297600 Enhancers Breast Myoepithelial Primary Cells Breast
28 chr5:127292400-127293200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr5:127292400-127296400 Enhancers Left Ventricle heart
30 chr5:127292600-127293200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
31 chr5:127292600-127293400 Enhancers Muscle Satellite Cultured Cells --
32 chr5:127292600-127293600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr5:127292600-127296400 Enhancers Cortex derived primary cultured neurospheres brain
34 chr5:127292600-127296400 Enhancers HepG2 liver
35 chr5:127292600-127298400 Enhancers Fetal Intestine Large intestine
36 chr5:127292600-127298600 Enhancers Fetal Intestine Small intestine

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Last update: Aug 31, 2015