Variant report

Variant	rs10519968
Chromosome Location	chr5:127322740-127322741
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:127317709..127324099-chr5:127413383..127420612,8	MCF-7	breast:
2	chr5:127321867..127323996-chr5:127418266..127420747,3	MCF-7	breast:
3	chr5:127232934..127234618-chr5:127322508..127324974,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245937	Chromatin interaction
ENSG00000064651	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10040931	0.83[CEU][hapmap]
rs10052149	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10055964	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10057048	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10059403	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10076010	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10463835	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10463836	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478786	0.81[EUR][1000 genomes]
rs10478787	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs10478788	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10478790	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10478791	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10478792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10519977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745009	0.82[EUR][1000 genomes]
rs11745023	0.82[CEU][hapmap]
rs12523625	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs13154863	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13161109	0.87[EUR][1000 genomes]
rs13167871	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13169878	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13174053	0.81[EUR][1000 genomes]
rs13177354	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13180050	0.81[EUR][1000 genomes]
rs13184942	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1558149	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs17606751	0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2041143	0.83[CEU][hapmap]
rs2108652	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2108654	0.81[EUR][1000 genomes]
rs34498802	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35673135	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35713319	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4141241	0.84[JPT][hapmap]
rs4836352	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4836354	0.93[ASN][1000 genomes]
rs5008451	0.89[CEU][hapmap]
rs59634534	0.81[EUR][1000 genomes]
rs6867103	0.88[CEU][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6867442	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6867465	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6867644	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6881456	0.80[EUR][1000 genomes]
rs6889393	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6892704	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs6897353	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732235	0.80[EUR][1000 genomes]
rs732236	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs7444438	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711776	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7719691	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7723104	0.84[JPT][hapmap]
rs7732912	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9327460	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9327461	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9327462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127290600-127332000	Weak transcription	Aorta	Aorta
2	chr5:127295800-127322800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:127297600-127332000	Weak transcription	Primary B cells from cord blood	blood
4	chr5:127297800-127323200	Weak transcription	Gastric	stomach
5	chr5:127297800-127323600	Weak transcription	HSMMtube	muscle
6	chr5:127297800-127358400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:127302400-127323400	Weak transcription	Fetal Stomach	stomach
8	chr5:127302600-127322800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:127304000-127333400	Weak transcription	Primary T cells from cord blood	blood
10	chr5:127306600-127333200	Weak transcription	Psoas Muscle	Psoas
11	chr5:127306800-127323200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:127306800-127323200	Weak transcription	Left Ventricle	heart
13	chr5:127306800-127323200	Weak transcription	NHEK	skin
14	chr5:127312800-127323200	Weak transcription	NHLF	lung
15	chr5:127317000-127323600	Weak transcription	Pancreas	Pancrea
16	chr5:127318000-127323000	Weak transcription	Fetal Heart	heart
17	chr5:127318000-127323400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:127318000-127328800	Weak transcription	Stomach Mucosa	stomach
19	chr5:127318400-127323000	Weak transcription	NHDF-Ad	bronchial
20	chr5:127318600-127323600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr5:127319200-127323200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:127320800-127323600	Enhancers	Adipose Nuclei	Adipose
23	chr5:127322000-127323000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:127322000-127323200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr5:127322000-127323200	Enhancers	A549	lung
26	chr5:127322600-127323600	Enhancers	Colon Smooth Muscle	Colon
27	chr5:127322600-127324200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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