The 2.0 version of rSNPBase

Variant report

Variant rs6889393
Chromosome Location chr5:127313373-127313374
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:26 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:127290600-127332000 Weak transcription Aorta Aorta
2 chr5:127292800-127314400 Weak transcription Pancreas Pancrea
3 chr5:127295800-127322800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
4 chr5:127296200-127322600 Weak transcription Colon Smooth Muscle Colon
5 chr5:127297600-127332000 Weak transcription Primary B cells from cord blood blood
6 chr5:127297800-127323200 Weak transcription Gastric stomach
7 chr5:127297800-127323600 Weak transcription HSMMtube muscle
8 chr5:127297800-127358400 Weak transcription Primary hematopoietic stem cells blood
9 chr5:127298600-127314400 Weak transcription Duodenum Mucosa Duodenum
10 chr5:127302400-127321600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr5:127302400-127323400 Weak transcription Fetal Stomach stomach
12 chr5:127302600-127322800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr5:127304000-127333400 Weak transcription Primary T cells from cord blood blood
14 chr5:127304200-127316000 Weak transcription A549 lung
15 chr5:127306600-127333200 Weak transcription Psoas Muscle Psoas
16 chr5:127306800-127318400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr5:127306800-127323200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr5:127306800-127323200 Weak transcription Left Ventricle heart
19 chr5:127306800-127323200 Weak transcription NHEK skin
20 chr5:127312200-127313400 Enhancers Cortex derived primary cultured neurospheres brain
21 chr5:127312800-127314000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
22 chr5:127312800-127314600 Enhancers Breast Myoepithelial Primary Cells Breast
23 chr5:127312800-127318000 Enhancers Stomach Mucosa stomach
24 chr5:127312800-127323200 Weak transcription NHLF lung
25 chr5:127313000-127313400 Enhancers Rectal Smooth Muscle rectum
26 chr5:127313200-127313400 Enhancers Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015