Variant report

Variant	rs10076010
Chromosome Location	chr5:127306522-127306523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127293751..127296384-chr5:127304334..127306609,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10040931	0.83[EUR][1000 genomes]
rs10041355	0.83[EUR][1000 genomes]
rs10041388	0.83[EUR][1000 genomes]
rs10052149	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10055964	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10057048	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10059403	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10463835	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10463836	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10478786	0.84[EUR][1000 genomes]
rs10478787	0.85[EUR][1000 genomes]
rs10478788	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10478790	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10478791	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10478792	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10519968	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10519977	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11745009	0.85[EUR][1000 genomes]
rs11745023	0.83[EUR][1000 genomes]
rs12523625	0.85[EUR][1000 genomes]
rs13154863	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13161109	0.92[EUR][1000 genomes]
rs13167871	0.91[ASN][1000 genomes]
rs13169878	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13174053	0.84[EUR][1000 genomes]
rs13177354	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13180050	0.85[EUR][1000 genomes]
rs13184942	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1558149	0.84[EUR][1000 genomes]
rs17606751	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2108652	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2108654	0.84[EUR][1000 genomes]
rs2409038	0.83[EUR][1000 genomes]
rs2409039	0.84[EUR][1000 genomes]
rs2898077	0.84[EUR][1000 genomes]
rs34498802	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35673135	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35713319	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4835934	0.84[EUR][1000 genomes]
rs4836352	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4836354	0.84[ASN][1000 genomes]
rs59634534	0.84[EUR][1000 genomes]
rs6867103	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6867442	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6867465	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6867644	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6881456	0.84[EUR][1000 genomes]
rs6889393	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6892704	0.85[EUR][1000 genomes]
rs6897353	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs732235	0.85[EUR][1000 genomes]
rs732236	0.85[EUR][1000 genomes]
rs7444438	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7711776	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7719691	0.87[ASN][1000 genomes]
rs7732912	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9327460	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9327461	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9327462	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127290600-127332000	Weak transcription	Aorta	Aorta
2	chr5:127292800-127314400	Weak transcription	Pancreas	Pancrea
3	chr5:127295800-127322800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:127296200-127307200	Weak transcription	NHLF	lung
5	chr5:127296200-127322600	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:127297600-127313200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:127297600-127332000	Weak transcription	Primary B cells from cord blood	blood
8	chr5:127297800-127323200	Weak transcription	Gastric	stomach
9	chr5:127297800-127323600	Weak transcription	HSMMtube	muscle
10	chr5:127297800-127358400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:127298600-127314400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr5:127300600-127312600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr5:127302400-127306800	Weak transcription	GM12878-XiMat	blood
14	chr5:127302400-127307000	Weak transcription	Ovary	ovary
15	chr5:127302400-127321600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:127302400-127323400	Weak transcription	Fetal Stomach	stomach
17	chr5:127302600-127309800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:127302600-127322800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:127302800-127306800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr5:127302800-127306800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:127302800-127306800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:127302800-127306800	Enhancers	HMEC	breast
23	chr5:127302800-127306800	Enhancers	NHEK	skin
24	chr5:127304000-127333400	Weak transcription	Primary T cells from cord blood	blood
25	chr5:127304200-127316000	Weak transcription	A549	lung
26	chr5:127305000-127306600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:127305200-127306800	Enhancers	Brain Cingulate Gyrus	brain
28	chr5:127305200-127307600	Enhancers	Fetal Heart	heart
29	chr5:127305600-127306600	Weak transcription	Brain Angular Gyrus	brain
30	chr5:127306000-127306600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr5:127306400-127306600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr5:127306400-127306600	Enhancers	Psoas Muscle	Psoas
33	chr5:127306400-127306600	Enhancers	Right Ventricle	heart
34	chr5:127306400-127306800	Enhancers	Left Ventricle	heart
35	chr5:127306400-127306800	Enhancers	Right Atrium	heart

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