Variant report

Variant	rs7718063
Chromosome Location	chr5:57654954-57654955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57654875..57656894-chr5:57657997..57659625,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10513145	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10805507	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11739498	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11740846	0.89[EUR][1000 genomes]
rs11745514	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11749794	0.89[EUR][1000 genomes]
rs11953112	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11959784	0.84[EUR][1000 genomes]
rs12522572	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13157057	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13187020	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1396503	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17709263	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17766068	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17766240	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34384235	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34415498	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35345509	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35917227	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3914030	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4700282	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4700283	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62368176	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62368203	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62368206	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs719427	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs719429	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv4842	chr5:57653257-57694850	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57649400-57655000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:57650200-57655600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:57650200-57655800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:57650400-57655800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:57650400-57656000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:57651800-57656400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:57653200-57655200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:57653600-57655000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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