Variant report

Variant	rs77190267
Chromosome Location	chr11:63535107-63535108
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr11:63535085-63535403	K562	blood:	n/a	n/a
2	POLR2A	chr11:63534934-63535330	HepG2	liver:	n/a	n/a
3	TAF7	chr11:63535019-63535350	H1-hESC	embryonic stem cell:	n/a	n/a
4	SIN3AK20	chr11:63534834-63535234	H1-hESC	embryonic stem cell:	n/a	n/a
5	BHLHE40	chr11:63535076-63535483	K562	blood:	n/a	n/a
6	MAX	chr11:63534812-63535381	SK-N-SH	brain:	n/a	n/a
7	IRF1	chr11:63534928-63535296	K562	blood:	n/a	chr11:63535210-63535219
8	SP1	chr11:63534857-63535336	H1-hESC	embryonic stem cell:	n/a	chr11:63535059-63535070 chr11:63535059-63535071 chr11:63535059-63535071
9	POLR2A	chr11:63535094-63535312	H1-hESC	embryonic stem cell:	n/a	n/a
10	SIN3AK20	chr11:63535014-63535309	A549	lung:	n/a	n/a
11	RCOR1	chr11:63534889-63535347	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr11:63534938-63535269	HepG2	liver:	n/a	n/a
13	RCOR1	chr11:63534892-63535999	K562	blood:	n/a	n/a
14	RAD21	chr11:63534806-63536230	SK-N-SH	brain:	n/a	chr11:63535823-63535837 chr11:63535823-63535832 chr11:63535825-63535838 chr11:63535666-63535679 chr11:63535822-63535841 chr11:63535476-63535488
15	TCF12	chr11:63534925-63535403	ECC-1	luminal epithelium:	n/a	chr11:63535212-63535221
16	POLR2A	chr11:63535085-63535199	HepG2	liver:	n/a	n/a
17	TCF12	chr11:63534823-63535346	A549	lung:	n/a	chr11:63535212-63535221
18	TAF1	chr11:63534847-63535348	H1-hESC	embryonic stem cell:	n/a	n/a
19	ELF1	chr11:63534928-63536041	GM12878	blood:	n/a	chr11:63535715-63535724
20	MAZ	chr11:63534904-63537094	GM12878	blood:	n/a	chr11:63535779-63535789 chr11:63535837-63535847
21	MAX	chr11:63534973-63535147	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr11:63534985-63535497	ProgFib	skin:	n/a	n/a
23	MAZ	chr11:63533898-63537592	IMR90	lung:	n/a	chr11:63535779-63535789 chr11:63535837-63535847
24	TFAP2C	chr11:63535079-63537088	Hela-S3	cervix:	n/a	chr11:63536284-63536299
25	POLR2A	chr11:63534992-63535192	MCF10A-Er-Src	breast:	n/a	n/a
26	CTCF	chr11:63534506-63536859	A549	lung:	n/a	chr11:63536572-63536585 chr11:63535824-63535837 chr11:63536692-63536705 chr11:63535834-63535847 chr11:63535826-63535836 chr11:63535821-63535839 chr11:63535823-63535844 chr11:63535824-63535837 chr11:63535822-63535838 chr11:63536570-63536588 chr11:63535824-63535833
27	TBP	chr11:63535024-63535282	Hela-S3	cervix:	n/a	n/a
28	ZBTB7A	chr11:63534900-63536107	ECC-1	luminal epithelium:	n/a	chr11:63535627-63535634
29	TCF7L2	chr11:63534896-63535476	Hela-S3	cervix:	n/a	n/a
30	STAT3	chr11:63535018-63535296	MCF10A-Er-Src	breast:	n/a	chr11:63535200-63535211
31	FOS	chr11:63535084-63535273	MCF10A-Er-Src	breast:	n/a	chr11:63535209-63535220
32	POLR2A	chr11:63535034-63535248	HepG2	liver:	n/a	n/a
33	MAZ	chr11:63534900-63536803	Hela-S3	cervix:	n/a	chr11:63535779-63535789 chr11:63535837-63535847
34	SIN3AK20	chr11:63534933-63535395	PFSK-1	brain:	n/a	n/a
35	SIN3AK20	chr11:63534993-63535288	A549	lung:	n/a	n/a
36	REST	chr11:63534517-63537808	H1-neurons	neurons:	n/a	chr11:63535702-63535712 chr11:63535771-63535781 chr11:63535790-63535803 chr11:63536356-63536366 chr11:63535815-63535828 chr11:63535778-63535791 chr11:63535775-63535788 chr11:63534588-63534606
37	MAX	chr11:63534990-63535190	H1-hESC	embryonic stem cell:	n/a	n/a
38	POLR2A	chr11:63534799-63535335	H1-hESC	embryonic stem cell:	n/a	n/a
39	JUND	chr11:63534954-63535384	K562	blood:	n/a	n/a
40	HEY1	chr11:63534883-63535309	HepG2	liver:	n/a	n/a
41	MYC	chr11:63535096-63535496	NB4	blood:	n/a	n/a
42	POLR2A	chr11:63534950-63535841	HUVEC	blood vessel:	n/a	n/a
43	MAX	chr11:63534794-63535312	ECC-1	luminal epithelium:	n/a	n/a
44	MAFK	chr11:63535064-63535356	K562	blood:	n/a	chr11:63535212-63535221
45	TAF1	chr11:63534870-63535377	H1-hESC	embryonic stem cell:	n/a	n/a
46	POLR2A	chr11:63534739-63537668	H1-neurons	neurons:	n/a	n/a
47	POLR2A	chr11:63535055-63535259	SK-N-SH	brain:	n/a	n/a
48	GTF2F1	chr11:63535074-63535479	H1-hESC	embryonic stem cell:	n/a	n/a
49	MAX	chr11:63534821-63535282	SK-N-SH	brain:	n/a	n/a
50	POLR2A	chr11:63534964-63535383	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:63448182..63450282-chr11:63533461..63536298,4	MCF-7	breast:
2	chr11:63534918..63536804-chr11:63668712..63670378,2	MCF-7	breast:
3	chr11:63532131..63538052-chr11:63579345..63585604,10	K562	blood:
4	chr11:63532069..63539323-chr11:63579489..63583130,14	MCF-7	breast:
5	chr11:63533773..63537846-chr11:63579275..63583196,6	MCF-7	breast:
6	chr11:63531277..63535286-chr11:63705300..63707994,3	MCF-7	breast:
7	chr11:63532131..63535124-chr11:63579146..63582872,4	K562	blood:
8	chr11:63534532..63537273-chr11:63602993..63606665,6	K562	blood:
9	chr11:63534031..63536529-chr11:63677173..63679815,2	K562	blood:

Variant related genes	Relation type
C11orf95	TF binding region
ENSG00000133318	Chromatin interaction
ENSG00000072518	Chromatin interaction
ENSG00000167771	Chromatin interaction
ENSG00000168005	Chromatin interaction
ENSG00000110583	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	esv1821734	chr11:63533300-63537509	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv3322085	chr11:63534376-63538774	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv3431841	chr11:63535026-63538474	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63532600-63535200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:63532800-63535600	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
3	chr11:63533800-63535200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:63533800-63535200	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
5	chr11:63534200-63535400	Flanking Active TSS	HUVEC	blood vessel
6	chr11:63534200-63537400	Active TSS	Fetal Brain Female	brain
7	chr11:63534400-63535200	Flanking Active TSS	NH-A	brain
8	chr11:63534400-63535400	Flanking Active TSS	HSMM	muscle
9	chr11:63534400-63535600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:63534400-63535600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:63534400-63535600	Flanking Active TSS	Dnd41	blood
12	chr11:63534400-63537400	Active TSS	HSMMtube	muscle
13	chr11:63534400-63537600	Active TSS	Brain Angular Gyrus	brain
14	chr11:63534600-63535200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:63534600-63535200	Flanking Active TSS	Brain Hippocampus Middle	brain
16	chr11:63534600-63535200	Flanking Active TSS	GM12878-XiMat	blood
17	chr11:63534600-63535200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr11:63534600-63535200	Flanking Active TSS	NHEK	skin
19	chr11:63534600-63535400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:63534600-63535600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr11:63534600-63535600	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr11:63534600-63535800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr11:63534600-63537000	Active TSS	Ovary	ovary
24	chr11:63534600-63537600	Active TSS	NHDF-Ad	bronchial
25	chr11:63534800-63535200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
26	chr11:63534800-63535200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:63534800-63535200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:63534800-63535200	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr11:63534800-63535200	Active TSS	Brain Germinal Matrix	brain
30	chr11:63534800-63535200	Flanking Active TSS	Thymus	Thymus
31	chr11:63534800-63535400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:63534800-63535400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr11:63534800-63535400	Flanking Active TSS	Liver	Liver
34	chr11:63534800-63535400	Active TSS	Colonic Mucosa	Colon
35	chr11:63534800-63535400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr11:63534800-63535600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr11:63534800-63535600	Flanking Active TSS	Primary B cells from cord blood	blood
38	chr11:63534800-63535600	Flanking Active TSS	Primary B cells from peripheral blood	blood
39	chr11:63534800-63535600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
40	chr11:63534800-63535600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr11:63534800-63535600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr11:63534800-63535600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr11:63534800-63535600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr11:63534800-63535600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:63534800-63535600	Flanking Active TSS	Fetal Muscle Trunk	muscle
46	chr11:63534800-63535600	Flanking Active TSS	Fetal Muscle Leg	muscle
47	chr11:63534800-63535600	Flanking Active TSS	Placenta	Placenta
48	chr11:63534800-63535600	Flanking Active TSS	Fetal Thymus	thymus
49	chr11:63534800-63535800	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr11:63534800-63537000	Active TSS	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links