Variant report

Variant	rs7719672
Chromosome Location	chr5:60774013-60774014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10447098	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17422055	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17422192	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17422406	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56802710	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58234049	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59375059	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60859415	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61325511	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7713032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7723653	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7732866	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753894	chr5:60731458-60777345	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60759800-60807400	Weak transcription	Fetal Stomach	stomach
2	chr5:60760400-60807800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:60760600-60824800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:60760800-60821200	Weak transcription	Esophagus	oesophagus
5	chr5:60761000-60781200	Weak transcription	Psoas Muscle	Psoas
6	chr5:60761000-60798000	Weak transcription	Aorta	Aorta
7	chr5:60761000-60820800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:60762400-60775000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:60763800-60792000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:60763800-60792400	Weak transcription	HMEC	breast
11	chr5:60763800-60804400	Weak transcription	NHDF-Ad	bronchial
12	chr5:60764000-60820600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:60764200-60775200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr5:60764200-60781400	Weak transcription	HSMMtube	muscle
15	chr5:60764600-60775200	Weak transcription	Colon Smooth Muscle	Colon
16	chr5:60764600-60775200	Weak transcription	Small Intestine	intestine
17	chr5:60764600-60780400	Weak transcription	Fetal Kidney	kidney
18	chr5:60764600-60792200	Weak transcription	NH-A	brain
19	chr5:60764800-60775200	Weak transcription	Adipose Nuclei	Adipose
20	chr5:60764800-60790000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:60764800-60790000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr5:60764800-60790000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr5:60764800-60792400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:60764800-60821000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr5:60765200-60789600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:60765200-60798200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr5:60766000-60792600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr5:60767400-60792400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr5:60767400-60821200	Weak transcription	Lung	lung
30	chr5:60767400-60837400	Weak transcription	Spleen	Spleen
31	chr5:60767600-60789400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr5:60767600-60791000	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr5:60767600-60807000	Weak transcription	Fetal Intestine Small	intestine
34	chr5:60767600-60820800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr5:60767800-60775000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr5:60767800-60775400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr5:60767800-60784800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr5:60768200-60775200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr5:60768200-60818800	Weak transcription	Thymus	Thymus
40	chr5:60768400-60782800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr5:60768600-60777600	Strong transcription	HSMM	muscle
42	chr5:60768600-60793000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:60770400-60792200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr5:60770800-60780600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:60770800-60798600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr5:60771000-60780400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr5:60771000-60781800	Weak transcription	Fetal Muscle Leg	muscle
48	chr5:60771000-60790200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr5:60771000-60791000	Weak transcription	Fetal Thymus	thymus
50	chr5:60771200-60776000	Weak transcription	Primary T cells from cord blood	blood

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