Variant report

Variant	rs7732866
Chromosome Location	chr5:60757168-60757169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60752201..60754945-chr5:60755647..60758882,3	K562	blood:
2	chr5:60743838..60746169-chr5:60756633..60758199,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10447098	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17422055	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17422192	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17422406	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56802710	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57430973	0.84[EUR][1000 genomes]
rs58234049	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59375059	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60859415	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61325511	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7713032	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7719672	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7723653	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753894	chr5:60731458-60777345	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv522826	chr5:60754419-60759524	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60744400-60767800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr5:60746000-60759600	Weak transcription	Aorta	Aorta
3	chr5:60746200-60759800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:60746400-60758600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr5:60747000-60757200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:60747000-60760600	Weak transcription	NHLF	lung
7	chr5:60747000-60762800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:60747200-60757200	Weak transcription	Left Ventricle	heart
9	chr5:60747200-60760200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:60747600-60760400	Weak transcription	NH-A	brain
11	chr5:60747600-60770600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:60747800-60757600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:60748800-60757800	Weak transcription	HSMMtube	muscle
14	chr5:60749000-60762200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr5:60750000-60760400	Weak transcription	Primary T cells from cord blood	blood
16	chr5:60750400-60757200	Weak transcription	Liver	Liver
17	chr5:60751600-60760400	Weak transcription	Right Atrium	heart
18	chr5:60752400-60757200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr5:60752600-60757200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr5:60752600-60759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:60752600-60760200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:60753000-60760200	Weak transcription	Adipose Nuclei	Adipose
23	chr5:60753200-60760200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:60754600-60758200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:60755000-60762600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:60755600-60757200	Genic enhancers	A549	lung
27	chr5:60755600-60758200	Enhancers	Stomach Mucosa	stomach
28	chr5:60755600-60762600	Enhancers	Brain Substantia Nigra	brain
29	chr5:60756000-60757400	Weak transcription	Colon Smooth Muscle	Colon
30	chr5:60756000-60759400	Weak transcription	Fetal Lung	lung
31	chr5:60756400-60759000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:60756400-60760400	Weak transcription	Brain Angular Gyrus	brain
33	chr5:60756800-60758000	Enhancers	Fetal Kidney	kidney
34	chr5:60756800-60758600	Enhancers	Brain Cingulate Gyrus	brain
35	chr5:60756800-60761000	Enhancers	Brain Anterior Caudate	brain
36	chr5:60757000-60757400	Enhancers	Colonic Mucosa	Colon
37	chr5:60757000-60757400	Enhancers	Duodenum Mucosa	Duodenum
38	chr5:60757000-60757400	Enhancers	Gastric	stomach
39	chr5:60757000-60757400	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr5:60757000-60757600	Enhancers	Psoas Muscle	Psoas
41	chr5:60757000-60757600	Enhancers	Small Intestine	intestine
42	chr5:60757000-60757800	Genic enhancers	HSMM	muscle
43	chr5:60757000-60758000	Enhancers	Fetal Intestine Large	intestine
44	chr5:60757000-60758000	Enhancers	Fetal Intestine Small	intestine
45	chr5:60757000-60758000	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr5:60757000-60758200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr5:60757000-60758200	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr5:60757000-60761600	Enhancers	Brain Hippocampus Middle	brain

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