Variant report

Variant	rs7721532
Chromosome Location	chr5:167725708-167725709
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167723928..167726382-chr5:167728525..167730726,3	MCF-7	breast:
2	chr5:167702796..167704910-chr5:167723958..167725780,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10051069	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10475874	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12108717	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12514628	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12517127	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12519918	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12522231	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17051843	0.83[EUR][1000 genomes]
rs17632741	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72822615	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72838320	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72838323	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72838326	1.00[ASN][1000 genomes]
rs72838333	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72838335	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7718390	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv949154	chr5:167691208-168323234	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv5119	chr5:167724987-167766076	Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167720400-167726000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr5:167720600-167727000	Weak transcription	GM12878-XiMat	blood
3	chr5:167722800-167729200	Weak transcription	Esophagus	oesophagus
4	chr5:167723000-167726600	Weak transcription	HSMM	muscle
5	chr5:167723000-167727200	Weak transcription	HSMMtube	muscle
6	chr5:167723000-167728800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:167723000-167728800	Weak transcription	Adipose Nuclei	Adipose
8	chr5:167723000-167728800	Weak transcription	NHDF-Ad	bronchial
9	chr5:167723000-167729200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:167723000-167730400	Weak transcription	Lung	lung
11	chr5:167723200-167726400	Weak transcription	Fetal Brain Male	brain
12	chr5:167723200-167726800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:167723200-167727400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:167723400-167726200	Weak transcription	Fetal Lung	lung
15	chr5:167723400-167726600	Weak transcription	NH-A	brain
16	chr5:167723400-167728800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:167723400-167728800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:167723400-167728800	Weak transcription	Fetal Heart	heart
19	chr5:167723400-167728800	Weak transcription	Osteobl	bone
20	chr5:167723600-167726200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:167723600-167726200	Genic enhancers	A549	lung
22	chr5:167723600-167726800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:167723600-167728600	Weak transcription	Fetal Intestine Large	intestine
24	chr5:167723800-167726200	Weak transcription	Fetal Brain Female	brain
25	chr5:167723800-167726400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:167724000-167726000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr5:167724000-167726000	Weak transcription	Brain Anterior Caudate	brain
28	chr5:167724000-167726000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr5:167724000-167726200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:167724000-167726200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr5:167724000-167726200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr5:167724000-167726200	Weak transcription	Brain Substantia Nigra	brain
33	chr5:167724000-167726200	Weak transcription	Stomach Mucosa	stomach
34	chr5:167724000-167726800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr5:167724000-167726800	Weak transcription	HMEC	breast
36	chr5:167724000-167727200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr5:167724000-167728000	Weak transcription	Fetal Intestine Small	intestine
38	chr5:167724000-167728800	Weak transcription	HepG2	liver
39	chr5:167724200-167726000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr5:167724200-167726000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr5:167724200-167726000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr5:167724200-167726000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr5:167724200-167726000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr5:167724200-167726000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr5:167724200-167726200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr5:167724200-167726200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr5:167724200-167726200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr5:167724200-167726200	Weak transcription	Hela-S3	cervix
49	chr5:167724200-167726400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr5:167724200-167726800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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