Variant report

Variant	rs7724251
Chromosome Location	chr5:118357978-118357979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000172869	Chromatin interaction
ENSG00000239011	Chromatin interaction
ENSG00000249494	Chromatin interaction
ENSG00000145779	Chromatin interaction
ENSG00000169570	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11949395	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11957794	1.00[AMR][1000 genomes]
rs11959853	0.80[YRI][hapmap]
rs11960477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1017548	chr5:118276479-118358394	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1015878	chr5:118288904-118414706	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv537881	chr5:118288904-118414706	Active TSS Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv882774	chr5:118325429-118553470	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
6	nsv1018539	chr5:118355284-118445244	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118350600-118360000	Enhancers	Primary B cells from peripheral blood	blood
2	chr5:118351600-118359800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:118353400-118358600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:118355200-118367600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:118355600-118360000	Enhancers	Primary B cells from cord blood	blood
6	chr5:118356000-118358400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:118356000-118359600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr5:118356200-118359200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr5:118356600-118358200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:118357400-118358400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:118357600-118358000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr5:118357600-118358400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr5:118357800-118358000	Enhancers	Duodenum Mucosa	Duodenum
14	chr5:118357800-118359400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr5:118357800-118359600	Enhancers	Stomach Mucosa	stomach
16	chr5:118357800-118359600	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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