Variant report

Variant	rs7724574
Chromosome Location	chr5:112457428-112457429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112455253..112458185-chr5:112461323..112464102,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10478113	0.82[CEU][hapmap]
rs10519335	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11743316	0.86[CHB][hapmap]
rs12186708	1.00[CEU][hapmap]
rs17135341	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4705798	0.82[CEU][hapmap]
rs57248292	0.87[ASN][1000 genomes]
rs6865341	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs6899273	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs73237117	0.87[ASN][1000 genomes]
rs73237121	0.84[ASN][1000 genomes]
rs73237140	0.87[ASN][1000 genomes]
rs7705130	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7719693	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7731121	0.85[EUR][1000 genomes]
rs7732705	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018344	chr5:112390951-112458853	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112431200-112461600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:112434000-112459200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:112450000-112459200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:112451000-112460600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:112451000-112478800	Weak transcription	Aorta	Aorta
6	chr5:112453800-112461800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:112454200-112457600	Enhancers	Liver	Liver
8	chr5:112454600-112459000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:112454600-112459400	Enhancers	NHDF-Ad	bronchial
10	chr5:112454600-112460600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:112454800-112460400	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:112454800-112460600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:112455000-112460000	Weak transcription	Fetal Brain Male	brain
14	chr5:112455000-112462200	Enhancers	Fetal Heart	heart
15	chr5:112455200-112459200	Weak transcription	Pancreas	Pancrea
16	chr5:112455200-112459400	Weak transcription	Brain Germinal Matrix	brain
17	chr5:112455200-112459400	Weak transcription	Fetal Brain Female	brain
18	chr5:112455400-112458000	Weak transcription	NHLF	lung
19	chr5:112455400-112458400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr5:112455400-112459200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr5:112455400-112459200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr5:112455400-112459600	Weak transcription	Colon Smooth Muscle	Colon
23	chr5:112455400-112460200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr5:112455400-112461400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr5:112455400-112461400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr5:112455600-112458200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr5:112455600-112460000	Weak transcription	Fetal Lung	lung
28	chr5:112456000-112458200	Weak transcription	Fetal Muscle Leg	muscle
29	chr5:112456200-112458600	Enhancers	HMEC	breast
30	chr5:112456200-112459200	Weak transcription	Right Ventricle	heart
31	chr5:112456200-112459400	Weak transcription	Fetal Kidney	kidney
32	chr5:112456200-112459800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr5:112456600-112459000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr5:112456600-112460000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr5:112456600-112467200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr5:112456800-112457800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr5:112456800-112458800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr5:112457000-112458800	Enhancers	NHEK	skin
39	chr5:112457200-112457600	Weak transcription	Psoas Muscle	Psoas
40	chr5:112457200-112458000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr5:112457200-112458400	Weak transcription	Right Atrium	heart
42	chr5:112457200-112458600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:112457200-112458800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:112457200-112458800	Weak transcription	Left Ventricle	heart
45	chr5:112457200-112460400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr5:112457200-112460400	Weak transcription	Ovary	ovary
47	chr5:112457400-112458600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr5:112457400-112458600	Enhancers	Muscle Satellite Cultured Cells	--
49	chr5:112457400-112458800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr5:112457400-112459000	Enhancers	Osteobl	bone

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