Variant report

Variant	rs7732705
Chromosome Location	chr5:112476917-112476918
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112476798..112478381-chr5:112478430..112480202,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10478113	0.81[AMR][1000 genomes]
rs10519335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519338	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12186708	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17135341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17135370	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55824950	0.81[EUR][1000 genomes]
rs6899273	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7719693	0.88[EUR][1000 genomes]
rs7724574	0.85[EUR][1000 genomes]
rs7731121	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112451000-112478800	Weak transcription	Aorta	Aorta
2	chr5:112458600-112477000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:112467400-112493200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:112469400-112477000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:112470200-112491000	Weak transcription	Fetal Kidney	kidney
6	chr5:112470600-112482000	Weak transcription	Fetal Heart	heart
7	chr5:112474800-112482400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:112475600-112479200	Strong transcription	Liver	Liver
9	chr5:112475800-112479600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:112476200-112477600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:112476200-112478400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:112476200-112478400	Enhancers	NHDF-Ad	bronchial
13	chr5:112476200-112479400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:112476400-112477000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:112476400-112477000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:112476400-112477000	Enhancers	Brain Cingulate Gyrus	brain
17	chr5:112476400-112477400	Genic enhancers	Ovary	ovary
18	chr5:112476400-112477400	Enhancers	Right Atrium	heart
19	chr5:112476400-112477400	Enhancers	NHLF	lung
20	chr5:112476400-112477600	Enhancers	Brain Substantia Nigra	brain
21	chr5:112476400-112478000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr5:112476400-112478000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr5:112476400-112478000	Enhancers	Left Ventricle	heart
24	chr5:112476400-112478200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:112476400-112478200	Enhancers	HSMMtube	muscle
26	chr5:112476400-112478600	Enhancers	Osteobl	bone
27	chr5:112476600-112477000	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr5:112476600-112477400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr5:112476600-112477400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr5:112476600-112477400	Strong transcription	Esophagus	oesophagus
31	chr5:112476600-112477400	Enhancers	Placenta	Placenta
32	chr5:112476600-112477400	Strong transcription	Fetal Stomach	stomach
33	chr5:112476600-112477600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:112476600-112477600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr5:112476600-112477800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:112476600-112478000	Enhancers	Brain Hippocampus Middle	brain
37	chr5:112476600-112478000	Enhancers	NH-A	brain
38	chr5:112476600-112478600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr5:112476600-112478600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr5:112476600-112478800	Enhancers	HMEC	breast
41	chr5:112476600-112478800	Genic enhancers	NHEK	skin
42	chr5:112476800-112477000	Enhancers	H9 Cell Line	embryonic stem cell
43	chr5:112476800-112477000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:112476800-112477200	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr5:112476800-112477400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr5:112476800-112477400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr5:112476800-112477400	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr5:112476800-112477400	Enhancers	Fetal Muscle Leg	muscle
49	chr5:112476800-112477400	Enhancers	HSMM	muscle
50	chr5:112476800-112477600	Enhancers	HUES48 Cell Line	embryonic stem cell

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