Variant report

Variant	rs7730415
Chromosome Location	chr5:57433345-57433346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16888043	1.00[EUR][1000 genomes]
rs60207420	1.00[EUR][1000 genomes]
rs7706708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7708251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7712149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57429000-57433400	Enhancers	Fetal Muscle Leg	muscle
2	chr5:57430600-57433400	Weak transcription	Brain Germinal Matrix	brain
3	chr5:57432800-57433400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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