Variant report

Variant	rs7732077
Chromosome Location	chr5:80482245-80482246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:80478508..80480756-chr5:80481685..80483734,2	MCF-7	breast:
2	chr5:80475399..80478769-chr5:80481164..80483786,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10474023	1.00[EUR][1000 genomes]
rs28482890	1.00[EUR][1000 genomes]
rs28690592	1.00[EUR][1000 genomes]
rs59230067	1.00[EUR][1000 genomes]
rs59628507	1.00[EUR][1000 genomes]
rs60394857	1.00[EUR][1000 genomes]
rs61001312	1.00[EUR][1000 genomes]
rs61051764	1.00[EUR][1000 genomes]
rs73768049	1.00[EUR][1000 genomes]
rs73768052	1.00[EUR][1000 genomes]
rs73768054	1.00[EUR][1000 genomes]
rs73768056	1.00[EUR][1000 genomes]
rs73768057	1.00[EUR][1000 genomes]
rs73768060	1.00[EUR][1000 genomes]
rs73768067	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1025799	chr5:80436584-80485252	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80461200-80484000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:80463200-80483600	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:80463200-80490800	Weak transcription	Brain Angular Gyrus	brain
4	chr5:80463400-80483600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:80464200-80528400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:80465200-80528200	Weak transcription	Ovary	ovary
7	chr5:80465600-80483800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:80466000-80512600	Weak transcription	Gastric	stomach
9	chr5:80466200-80483400	Weak transcription	Left Ventricle	heart
10	chr5:80466600-80490800	Weak transcription	Right Ventricle	heart
11	chr5:80468800-80483800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:80474800-80487000	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr5:80475000-80484600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr5:80475000-80485200	Strong transcription	Primary T cells from cord blood	blood
15	chr5:80475200-80490600	Weak transcription	Brain Anterior Caudate	brain
16	chr5:80476600-80483800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr5:80476800-80483800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:80476800-80490600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr5:80477000-80483800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr5:80477000-80483800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:80477000-80490400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:80477000-80490800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr5:80477200-80483400	Weak transcription	Brain Substantia Nigra	brain
24	chr5:80477800-80488600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr5:80478200-80483800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:80478200-80488000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr5:80478400-80490800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr5:80479200-80483400	Weak transcription	Adipose Nuclei	Adipose
29	chr5:80479800-80483200	Weak transcription	GM12878-XiMat	blood
30	chr5:80480200-80484000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:80480600-80484000	Weak transcription	HepG2	liver
32	chr5:80481000-80483400	Weak transcription	Fetal Heart	heart
33	chr5:80481200-80484200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr5:80481200-80484600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr5:80481600-80484000	Weak transcription	Fetal Muscle Leg	muscle
36	chr5:80481800-80483000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr5:80482000-80482800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr5:80482000-80483600	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr5:80482200-80490600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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