Variant report

Variant	rs7734904
Chromosome Location	chr5:108271655-108271656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10056169	0.85[MEX][hapmap]
rs11742595	0.92[AFR][1000 genomes]
rs11948881	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11949066	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11949367	0.86[EUR][1000 genomes]
rs11949510	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11949619	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11949648	1.00[CEU][hapmap];0.81[LWK][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes]
rs11949706	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11951971	0.88[EUR][1000 genomes]
rs11951974	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11952227	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11952572	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11953136	0.88[EUR][1000 genomes]
rs11953198	1.00[GIH][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs11953486	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11954716	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11954988	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11955886	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11956908	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11957358	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11958918	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11959492	0.89[EUR][1000 genomes]
rs11959577	0.85[EUR][1000 genomes]
rs11959681	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11960713	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17534354	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs34412145	0.88[EUR][1000 genomes]
rs34679271	0.80[EUR][1000 genomes]
rs3851457	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3851458	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56134914	0.85[EUR][1000 genomes]
rs56381733	0.84[EUR][1000 genomes]
rs57158292	0.80[EUR][1000 genomes]
rs57404758	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57622369	0.86[EUR][1000 genomes]
rs59055229	0.84[EUR][1000 genomes]
rs59216020	0.88[EUR][1000 genomes]
rs60946864	0.88[EUR][1000 genomes]
rs66485253	0.88[EUR][1000 genomes]
rs66834040	0.87[EUR][1000 genomes]
rs67156774	0.88[EUR][1000 genomes]
rs67338203	0.84[EUR][1000 genomes]
rs72787096	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72787098	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72787099	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72787100	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72787101	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72787102	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72789304	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72789305	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72789306	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72789307	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72789308	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72789309	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72789312	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72789313	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72789315	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72789316	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72789319	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72789320	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72789326	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72789332	0.95[EUR][1000 genomes]
rs72789333	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72789335	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72789341	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72789345	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72789347	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72789348	0.95[EUR][1000 genomes]
rs72789350	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72789352	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72790510	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72790512	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72790514	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72790515	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72790520	0.89[EUR][1000 genomes]
rs72790521	0.89[EUR][1000 genomes]
rs72790524	0.88[EUR][1000 genomes]
rs72790525	0.88[EUR][1000 genomes]
rs72790528	0.88[EUR][1000 genomes]
rs72790529	0.88[EUR][1000 genomes]
rs72790530	0.88[EUR][1000 genomes]
rs72790538	0.88[EUR][1000 genomes]
rs72790539	0.88[EUR][1000 genomes]
rs72790542	0.88[EUR][1000 genomes]
rs72790545	0.88[EUR][1000 genomes]
rs72790546	0.88[EUR][1000 genomes]
rs72790548	0.85[EUR][1000 genomes]
rs72790551	0.88[EUR][1000 genomes]
rs72790552	0.88[EUR][1000 genomes]
rs72790559	0.85[EUR][1000 genomes]
rs72790562	0.86[EUR][1000 genomes]
rs72790565	0.86[EUR][1000 genomes]
rs72790567	0.86[EUR][1000 genomes]
rs72790568	0.86[EUR][1000 genomes]
rs72790574	0.86[EUR][1000 genomes]
rs72790577	0.86[EUR][1000 genomes]
rs72790579	0.86[EUR][1000 genomes]
rs72792001	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72793903	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72793905	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72793906	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72793909	0.92[EUR][1000 genomes]
rs72793918	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72793920	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72793922	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72793923	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72793926	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72793927	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72793930	0.87[EUR][1000 genomes]
rs72793933	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73209347	0.88[EUR][1000 genomes]
rs7713828	0.84[EUR][1000 genomes]
rs7723264	0.85[EUR][1000 genomes]
rs7723604	0.85[EUR][1000 genomes]
rs7723644	0.80[EUR][1000 genomes]
rs7735425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7736915	0.80[EUR][1000 genomes]
rs919771	0.84[CEU][hapmap];0.89[LWK][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1016343	chr5:108220116-108364687	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv882691	chr5:108229760-108366473	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7734904	WDR36	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108203800-108323400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:108214200-108272200	Weak transcription	Gastric	stomach
3	chr5:108217600-108323200	Weak transcription	Left Ventricle	heart
4	chr5:108221400-108280600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:108230200-108302400	Weak transcription	HSMM	muscle
6	chr5:108244200-108295000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:108247200-108277600	Weak transcription	Fetal Lung	lung
8	chr5:108250400-108277600	Weak transcription	Brain Hippocampus Middle	brain
9	chr5:108254000-108311200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:108260600-108277600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:108268200-108280800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:108268400-108301400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:108270000-108273400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:108270400-108272000	Enhancers	Colon Smooth Muscle	Colon
15	chr5:108270600-108289200	Weak transcription	K562	blood
16	chr5:108271000-108271800	Enhancers	Fetal Stomach	stomach
17	chr5:108271000-108273400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:108271200-108272800	Weak transcription	Fetal Intestine Large	intestine
19	chr5:108271200-108278800	Weak transcription	Ovary	ovary
20	chr5:108271400-108272800	Weak transcription	Fetal Intestine Small	intestine
21	chr5:108271600-108272800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links