The 2.0 version of rSNPBase

Variant report

Variant rs59055229
Chromosome Location chr5:108316302-108316303
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:108203800-108323400 Weak transcription Primary B cells from cord blood blood
2 chr5:108217600-108323200 Weak transcription Left Ventricle heart
3 chr5:108277600-108322400 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr5:108279200-108325600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr5:108282200-108324600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr5:108282400-108327200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
7 chr5:108283400-108319000 Weak transcription Muscle Satellite Cultured Cells --
8 chr5:108289200-108318600 Weak transcription NHDF-Ad bronchial
9 chr5:108290000-108322000 Weak transcription Rectal Smooth Muscle rectum
10 chr5:108290000-108328800 Weak transcription Esophagus oesophagus
11 chr5:108293400-108325600 Weak transcription NHEK skin
12 chr5:108294400-108329400 Weak transcription Brain Hippocampus Middle brain
13 chr5:108295200-108319400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr5:108295800-108316600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr5:108298000-108316400 Weak transcription Brain Substantia Nigra brain
16 chr5:108299600-108328800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr5:108301400-108328600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr5:108301600-108361200 Weak transcription Primary T cells from cord blood blood
19 chr5:108301800-108318600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr5:108302200-108330200 Weak transcription Stomach Smooth Muscle stomach
21 chr5:108303000-108318800 Weak transcription Brain Angular Gyrus brain
22 chr5:108303000-108319400 Weak transcription HSMM muscle
23 chr5:108303000-108329000 Weak transcription Gastric stomach
24 chr5:108303200-108318800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr5:108303200-108321200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
26 chr5:108303200-108322200 Weak transcription Pancreas Pancrea
27 chr5:108303200-108322400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr5:108303200-108331800 Weak transcription Ovary ovary
29 chr5:108303800-108321000 Weak transcription Fetal Lung lung
30 chr5:108303800-108322000 Weak transcription Primary hematopoietic stem cells blood
31 chr5:108303800-108322200 Weak transcription Cortex derived primary cultured neurospheres brain
32 chr5:108304000-108328800 Weak transcription Fetal Intestine Small intestine
33 chr5:108308400-108328800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr5:108308400-108336000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
35 chr5:108309800-108333600 Weak transcription Fetal Muscle Trunk muscle
36 chr5:108310000-108323400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr5:108310200-108322400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr5:108310200-108322400 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr5:108310400-108322400 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr5:108311600-108321200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr5:108313200-108322400 Weak transcription Psoas Muscle Psoas
42 chr5:108313800-108321200 Weak transcription Lung lung
43 chr5:108314200-108329400 Weak transcription Adipose Nuclei Adipose
44 chr5:108314800-108316400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr5:108316000-108319200 Weak transcription Osteobl bone
46 chr5:108316200-108316400 Enhancers iPS-15b Cell Line embryonic stem cell
47 chr5:108316200-108316800 Strong transcription Breast Myoepithelial Primary Cells Breast
48 chr5:108316200-108317600 Weak transcription HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015