Variant report

Variant	rs73213504
Chromosome Location	chr5:108371047-108371048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs17161573	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17161574	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3797817	0.85[EUR][1000 genomes]
rs3797822	1.00[EUR][1000 genomes]
rs3851456	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56381733	0.83[ASN][1000 genomes]
rs56792678	1.00[EUR][1000 genomes]
rs58620246	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58642014	1.00[EUR][1000 genomes]
rs58834152	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59055229	0.83[ASN][1000 genomes]
rs59699586	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59923567	1.00[EUR][1000 genomes]
rs60094908	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60144513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61090818	1.00[EUR][1000 genomes]
rs61155278	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6594344	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67338203	0.83[ASN][1000 genomes]
rs6872912	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73209338	1.00[EUR][1000 genomes]
rs73209345	1.00[EUR][1000 genomes]
rs73209352	1.00[EUR][1000 genomes]
rs73209366	1.00[EUR][1000 genomes]
rs73211537	1.00[EUR][1000 genomes]
rs73211547	1.00[EUR][1000 genomes]
rs73211557	1.00[EUR][1000 genomes]
rs73211567	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73211580	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73211584	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73211589	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73211590	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73211596	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73780769	0.92[EUR][1000 genomes]
rs7715534	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7723612	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108350800-108390400	Weak transcription	HSMMtube	muscle
2	chr5:108352400-108381400	Weak transcription	Fetal Lung	lung
3	chr5:108356000-108399000	Weak transcription	HSMM	muscle
4	chr5:108356400-108389200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:108360200-108374000	Weak transcription	HUVEC	blood vessel
6	chr5:108360400-108371400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:108360400-108373400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:108360400-108381200	Weak transcription	Adipose Nuclei	Adipose
9	chr5:108360400-108389000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:108360400-108389400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:108360400-108389600	Weak transcription	Brain Angular Gyrus	brain
12	chr5:108360400-108389800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:108360400-108389800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr5:108360400-108400400	Weak transcription	NHEK	skin
15	chr5:108360400-108404800	Weak transcription	Colon Smooth Muscle	Colon
16	chr5:108360400-108425200	Weak transcription	Aorta	Aorta
17	chr5:108360600-108382400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:108360600-108385000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:108364600-108374000	Weak transcription	A549	lung
20	chr5:108365600-108389400	Weak transcription	HepG2	liver
21	chr5:108366600-108387200	Weak transcription	GM12878-XiMat	blood
22	chr5:108366800-108377400	Weak transcription	Fetal Heart	heart
23	chr5:108367000-108387000	Weak transcription	Left Ventricle	heart
24	chr5:108367800-108375200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr5:108368800-108387400	Weak transcription	Pancreas	Pancrea
26	chr5:108370800-108372200	Enhancers	Osteobl	bone
27	chr5:108371000-108371200	Flanking Active TSS	NHDF-Ad	bronchial
28	chr5:108371000-108371600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr5:108371000-108371600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:108371000-108371800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr5:108371000-108372200	Enhancers	NHLF	lung

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