Variant report

Variant	rs73211557
Chromosome Location	chr5:108308791-108308792
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108300744..108303743-chr5:108308321..108310024,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10515399	0.84[AFR][1000 genomes]
rs11953198	1.00[ASN][1000 genomes]
rs17161573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17161574	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3797817	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3797822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3851456	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56134914	1.00[ASN][1000 genomes]
rs56381733	0.93[ASN][1000 genomes]
rs56792678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57158292	1.00[ASN][1000 genomes]
rs58620246	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58642014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58834152	0.92[EUR][1000 genomes]
rs59055229	0.93[ASN][1000 genomes]
rs59923567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60094908	0.92[EUR][1000 genomes]
rs60144513	1.00[EUR][1000 genomes]
rs61090818	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61155278	1.00[EUR][1000 genomes]
rs61640970	1.00[ASN][1000 genomes]
rs6594344	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66485253	1.00[ASN][1000 genomes]
rs66834040	1.00[ASN][1000 genomes]
rs67145801	1.00[ASN][1000 genomes]
rs67156774	1.00[ASN][1000 genomes]
rs67338203	0.93[ASN][1000 genomes]
rs6872912	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6882759	0.82[AFR][1000 genomes]
rs72793930	1.00[ASN][1000 genomes]
rs73209329	1.00[ASN][1000 genomes]
rs73209333	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73209338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73209345	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73209347	1.00[ASN][1000 genomes]
rs73209352	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73209366	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211525	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73211537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211547	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211553	0.83[AFR][1000 genomes]
rs73211559	0.84[AFR][1000 genomes]
rs73211560	0.84[AFR][1000 genomes]
rs73211567	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73211580	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73211584	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73211589	1.00[EUR][1000 genomes]
rs73211590	0.92[EUR][1000 genomes]
rs73211596	1.00[EUR][1000 genomes]
rs73213504	1.00[EUR][1000 genomes]
rs73778344	0.82[AFR][1000 genomes]
rs73778358	0.84[AFR][1000 genomes]
rs73780769	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713828	1.00[ASN][1000 genomes]
rs7715534	0.92[EUR][1000 genomes]
rs7723264	1.00[ASN][1000 genomes]
rs7723604	1.00[ASN][1000 genomes]
rs7723612	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723644	1.00[ASN][1000 genomes]
rs7736915	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016343	chr5:108220116-108364687	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv882691	chr5:108229760-108366473	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108203800-108323400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:108217600-108323200	Weak transcription	Left Ventricle	heart
3	chr5:108254000-108311200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:108277600-108322400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:108279200-108325600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:108281000-108313400	Weak transcription	Adipose Nuclei	Adipose
7	chr5:108282200-108324600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:108282400-108327200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:108283400-108319000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:108287800-108310000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:108289200-108309200	Weak transcription	Hela-S3	cervix
12	chr5:108289200-108318600	Weak transcription	NHDF-Ad	bronchial
13	chr5:108290000-108313600	Weak transcription	Aorta	Aorta
14	chr5:108290000-108322000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr5:108290000-108328800	Weak transcription	Esophagus	oesophagus
16	chr5:108293400-108325600	Weak transcription	NHEK	skin
17	chr5:108294400-108329400	Weak transcription	Brain Hippocampus Middle	brain
18	chr5:108295200-108319400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:108295800-108316600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:108296600-108311800	Weak transcription	HSMMtube	muscle
21	chr5:108297000-108313400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr5:108298000-108316400	Weak transcription	Brain Substantia Nigra	brain
23	chr5:108298200-108315800	Weak transcription	HepG2	liver
24	chr5:108299600-108328800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr5:108300400-108314200	Weak transcription	NH-A	brain
26	chr5:108301400-108328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr5:108301600-108361200	Weak transcription	Primary T cells from cord blood	blood
28	chr5:108301800-108318600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:108302200-108330200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr5:108303000-108310000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr5:108303000-108313600	Weak transcription	Lung	lung
32	chr5:108303000-108318800	Weak transcription	Brain Angular Gyrus	brain
33	chr5:108303000-108319400	Weak transcription	HSMM	muscle
34	chr5:108303000-108329000	Weak transcription	Gastric	stomach
35	chr5:108303200-108309200	Weak transcription	Liver	Liver
36	chr5:108303200-108311000	Weak transcription	Dnd41	blood
37	chr5:108303200-108315400	Weak transcription	Fetal Stomach	stomach
38	chr5:108303200-108318800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr5:108303200-108321200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr5:108303200-108322200	Weak transcription	Pancreas	Pancrea
41	chr5:108303200-108322400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:108303200-108331800	Weak transcription	Ovary	ovary
43	chr5:108303400-108312400	Weak transcription	Fetal Muscle Leg	muscle
44	chr5:108303600-108315600	Weak transcription	HMEC	breast
45	chr5:108303800-108321000	Weak transcription	Fetal Lung	lung
46	chr5:108303800-108322000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr5:108303800-108322200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr5:108304000-108328800	Weak transcription	Fetal Intestine Small	intestine
49	chr5:108308400-108328800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr5:108308400-108336000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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