Variant report

Variant	rs73209333
Chromosome Location	chr5:108265706-108265707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11953198	1.00[ASN][1000 genomes]
rs17161573	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17161574	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3797817	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3797822	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3851456	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56134914	1.00[ASN][1000 genomes]
rs56381733	0.93[ASN][1000 genomes]
rs56792678	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57158292	1.00[ASN][1000 genomes]
rs58620246	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58642014	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59055229	0.93[ASN][1000 genomes]
rs59923567	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61090818	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61640970	1.00[ASN][1000 genomes]
rs6594344	0.80[ASN][1000 genomes]
rs66485253	1.00[ASN][1000 genomes]
rs66834040	1.00[ASN][1000 genomes]
rs67145801	1.00[ASN][1000 genomes]
rs67156774	1.00[ASN][1000 genomes]
rs67338203	0.93[ASN][1000 genomes]
rs6872912	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72793930	1.00[ASN][1000 genomes]
rs73209329	1.00[ASN][1000 genomes]
rs73209338	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73209345	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73209347	1.00[ASN][1000 genomes]
rs73209352	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73209366	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73211525	1.00[ASN][1000 genomes]
rs73211537	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73211547	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73211557	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73211567	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73211580	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73211584	0.80[ASN][1000 genomes]
rs73780769	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7713828	1.00[ASN][1000 genomes]
rs7723264	1.00[ASN][1000 genomes]
rs7723604	1.00[ASN][1000 genomes]
rs7723612	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7723644	1.00[ASN][1000 genomes]
rs7736915	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1016343	chr5:108220116-108364687	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv882691	chr5:108229760-108366473	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3373526	chr5:108265078-108267626	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108197000-108268200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:108199200-108271400	Weak transcription	Aorta	Aorta
3	chr5:108203800-108323400	Weak transcription	Primary B cells from cord blood	blood
4	chr5:108208200-108268800	Weak transcription	Primary T cells from cord blood	blood
5	chr5:108214200-108272200	Weak transcription	Gastric	stomach
6	chr5:108217600-108323200	Weak transcription	Left Ventricle	heart
7	chr5:108221400-108280600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:108229600-108269800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:108230200-108302400	Weak transcription	HSMM	muscle
10	chr5:108242200-108271000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:108244200-108295000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:108247200-108277600	Weak transcription	Fetal Lung	lung
13	chr5:108250400-108277600	Weak transcription	Brain Hippocampus Middle	brain
14	chr5:108254000-108266400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:108254000-108269400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:108254000-108311200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:108260400-108268000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr5:108260600-108267200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:108260600-108269800	Weak transcription	Fetal Intestine Small	intestine
20	chr5:108260600-108270800	Weak transcription	Ovary	ovary
21	chr5:108260600-108277600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:108263400-108271000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:108265600-108268200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr5:108265600-108269800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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