Variant report

Variant	rs773512
Chromosome Location	chr9:93952033-93952034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93939078..93941817-chr9:93947414..93952988,4	K562	blood:
2	chr9:93948011..93949691-chr9:93951858..93953377,2	MCF-7	breast:

rs_ID	r²[population]
rs1397575	0.83[MEX][hapmap]
rs773507	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7856089	0.90[CEU][hapmap];0.83[MEX][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs773512	FGD3	cis	parietal	SCAN

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93940800-93954000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:93941000-93953400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:93941000-93957400	Weak transcription	Gastric	stomach
4	chr9:93949000-93953400	Weak transcription	Fetal Lung	lung
5	chr9:93949400-93953000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:93949400-93953200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:93949400-93954000	Weak transcription	Spleen	Spleen
8	chr9:93949800-93953000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:93949800-93953000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:93949800-93953200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:93949800-93953200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr9:93949800-93953400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr9:93949800-93953400	Weak transcription	Hela-S3	cervix
14	chr9:93950000-93953400	Weak transcription	HepG2	liver
15	chr9:93950000-93955000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:93950200-93953400	Weak transcription	Fetal Intestine Large	intestine
17	chr9:93950200-93953800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:93950200-93953800	Weak transcription	Right Atrium	heart
19	chr9:93950200-93954200	Weak transcription	Colonic Mucosa	Colon
20	chr9:93950200-93954400	Weak transcription	HUVEC	blood vessel
21	chr9:93950400-93953200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr9:93950400-93953400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr9:93950400-93953800	Weak transcription	Psoas Muscle	Psoas
24	chr9:93950400-93953800	Weak transcription	Right Ventricle	heart
25	chr9:93950400-93954000	Weak transcription	Adipose Nuclei	Adipose
26	chr9:93950400-93954000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr9:93950400-93954400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:93950600-93953200	Weak transcription	Fetal Muscle Leg	muscle
29	chr9:93950600-93953200	Weak transcription	Left Ventricle	heart
30	chr9:93950600-93953400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr9:93950600-93953800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:93950600-93953800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr9:93950600-93954200	Weak transcription	HSMM	muscle
34	chr9:93950600-93954400	Weak transcription	Stomach Mucosa	stomach
35	chr9:93950600-93954800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr9:93950800-93953400	Weak transcription	Fetal Heart	heart
37	chr9:93950800-93953400	Weak transcription	NHDF-Ad	bronchial
38	chr9:93950800-93954000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:93950800-93954000	Weak transcription	NHLF	lung
40	chr9:93950800-93954200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:93950800-93954200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr9:93950800-93954400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr9:93950800-93954400	Weak transcription	NH-A	brain
44	chr9:93950800-93954400	Weak transcription	Osteobl	bone
45	chr9:93951000-93953600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:93951000-93954400	Weak transcription	Colon Smooth Muscle	Colon
47	chr9:93951600-93953200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:93951600-93953200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr9:93951600-93954400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr9:93951600-93954400	Weak transcription	Esophagus	oesophagus

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