Variant report

Variant	rs7735200
Chromosome Location	chr5:178402407-178402408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10070619	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs12516516	1.00[JPT][hapmap]
rs13171869	1.00[JPT][hapmap]
rs13172044	1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs13177030	0.99[EUR][1000 genomes]
rs1496948	1.00[JPT][hapmap]
rs1845939	1.00[JPT][hapmap]
rs34551446	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1017941	chr5:178384214-178427401	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv537974	chr5:178384214-178427401	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv883219	chr5:178390237-178454118	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv883220	chr5:178394717-178454118	ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7735200	B4GALT7	cis	parietal	SCAN
rs7735200	CANX	cis	parietal	SCAN
rs7735200	BTNL9	cis	cerebellum	SCAN
rs7735200	EIF4E1B	cis	cerebellum	SCAN
rs7735200	PPP1R14C	trans	brain	seeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
2	chr5:178389400-178405200	ZNF genes & repeats	Brain Germinal Matrix	brain
3	chr5:178397400-178409200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:178398000-178409000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
5	chr5:178398200-178403800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:178399000-178404600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr5:178399400-178406200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
8	chr5:178399800-178407200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
9	chr5:178401000-178404200	ZNF genes & repeats	Brain Hippocampus Middle	brain
10	chr5:178401000-178406800	ZNF genes & repeats	Fetal Lung	lung
11	chr5:178401000-178414600	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr5:178401200-178404400	ZNF genes & repeats	Liver	Liver
13	chr5:178401200-178405200	ZNF genes & repeats	Aorta	Aorta
14	chr5:178401200-178406800	ZNF genes & repeats	Ovary	ovary
15	chr5:178401600-178404400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
16	chr5:178401800-178404600	ZNF genes & repeats	Fetal Stomach	stomach
17	chr5:178402000-178404000	ZNF genes & repeats	Fetal Brain Male	brain
18	chr5:178402000-178405800	ZNF genes & repeats	Fetal Muscle Leg	muscle
19	chr5:178402000-178414400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr5:178402200-178403400	ZNF genes & repeats	Brain Angular Gyrus	brain
21	chr5:178402200-178403600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:178402200-178405000	ZNF genes & repeats	Pancreas	Pancrea
23	chr5:178402400-178402800	ZNF genes & repeats	Fetal Heart	heart
24	chr5:178402400-178404000	ZNF genes & repeats	Right Ventricle	heart

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