Variant report

Variant	rs7736739
Chromosome Location	chr5:111727384-111727385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10036357	0.82[AFR][1000 genomes]
rs10061025	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10069313	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10069608	0.82[AFR][1000 genomes]
rs10069773	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10071862	0.82[AFR][1000 genomes]
rs10071986	0.82[AFR][1000 genomes]
rs10076627	0.88[AFR][1000 genomes]
rs10077309	0.82[AFR][1000 genomes]
rs13355990	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1524424	0.86[AFR][1000 genomes]
rs17134454	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs28806604	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs28836584	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs28887818	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6863610	0.82[AFR][1000 genomes]
rs6878158	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73214254	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73214256	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73218343	0.80[AFR][1000 genomes]
rs7705094	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7706737	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7710507	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7711662	0.82[AFR][1000 genomes]
rs7714450	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7730739	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7736305	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7736457	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9885177	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9885390	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv531291	chr5:111497440-111756788	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv882714	chr5:111655382-111807579	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111709200-111745400	Weak transcription	Esophagus	oesophagus
2	chr5:111715800-111732200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:111717000-111732200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:111717600-111735000	Weak transcription	Right Ventricle	heart
5	chr5:111720400-111742800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:111720800-111732200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:111720800-111732200	Weak transcription	Spleen	Spleen
8	chr5:111724400-111736000	Weak transcription	Right Atrium	heart
9	chr5:111724600-111732000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:111724600-111737600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:111725600-111738000	Weak transcription	Adipose Nuclei	Adipose
12	chr5:111725800-111742400	Weak transcription	Fetal Kidney	kidney
13	chr5:111726200-111742400	Weak transcription	Lung	lung
14	chr5:111726400-111735400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:111726400-111738800	Weak transcription	Left Ventricle	heart
16	chr5:111726400-111742400	Weak transcription	Pancreas	Pancrea
17	chr5:111727000-111738000	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links