Variant report

Variant	rs13355990
Chromosome Location	chr5:111710441-111710442
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10036357	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10056040	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10059675	0.92[EUR][1000 genomes]
rs10061025	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10069313	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10069608	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10069773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10071862	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10071986	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10076627	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10077309	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10477480	1.00[EUR][1000 genomes]
rs10478080	0.96[ASN][1000 genomes]
rs10478081	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10478082	0.96[ASN][1000 genomes]
rs10478083	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478084	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11288564	0.84[EUR][1000 genomes]
rs1524424	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134423	1.00[ASN][1000 genomes]
rs17134429	1.00[EUR][1000 genomes]
rs17134454	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134475	1.00[EUR][1000 genomes]
rs17134521	1.00[EUR][1000 genomes]
rs28497526	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28631626	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28806604	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28831993	1.00[EUR][1000 genomes]
rs28836584	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28851506	0.81[AFR][1000 genomes]
rs28887818	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6594597	1.00[EUR][1000 genomes]
rs6863610	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6865715	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6873453	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6878158	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883800	1.00[EUR][1000 genomes]
rs6884339	0.96[ASN][1000 genomes]
rs6890476	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6891512	1.00[ASN][1000 genomes]
rs6895299	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73214254	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73214256	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73218338	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73218343	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7705094	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7706737	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7709879	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7709963	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7710507	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7711662	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7714450	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7730739	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7736305	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7736457	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7736739	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9326853	0.80[AFR][1000 genomes]
rs9885137	1.00[ASN][1000 genomes]
rs9885177	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885182	0.92[EUR][1000 genomes]
rs9885209	0.92[EUR][1000 genomes]
rs9885211	0.92[EUR][1000 genomes]
rs9885390	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv531291	chr5:111497440-111756788	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv882714	chr5:111655382-111807579	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111701600-111712200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:111704400-111726000	Weak transcription	Lung	lung
3	chr5:111705600-111710800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:111705600-111714600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:111706600-111711800	Enhancers	Fetal Heart	heart
6	chr5:111707400-111714600	Weak transcription	Ovary	ovary
7	chr5:111707400-111726000	Weak transcription	Pancreas	Pancrea
8	chr5:111708400-111725600	Weak transcription	Fetal Brain Male	brain
9	chr5:111708800-111711000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr5:111708800-111711200	Enhancers	Adipose Nuclei	Adipose
11	chr5:111709200-111710800	Weak transcription	Left Ventricle	heart
12	chr5:111709200-111725600	Weak transcription	Psoas Muscle	Psoas
13	chr5:111709200-111745400	Weak transcription	Esophagus	oesophagus
14	chr5:111709600-111710800	Weak transcription	Right Atrium	heart
15	chr5:111709800-111711400	Enhancers	Right Ventricle	heart
16	chr5:111709800-111711600	Enhancers	Aorta	Aorta
17	chr5:111710000-111711400	Enhancers	Colon Smooth Muscle	Colon
18	chr5:111710000-111715200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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