Variant report

Variant	rs73218338
Chromosome Location	chr5:111757071-111757072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10036273	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10036357	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10039730	0.94[ASN][1000 genomes]
rs10041380	0.94[ASN][1000 genomes]
rs10044406	0.94[ASN][1000 genomes]
rs10051512	0.94[ASN][1000 genomes]
rs10056040	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10059675	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10060534	0.94[ASN][1000 genomes]
rs10060962	0.94[ASN][1000 genomes]
rs10061025	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10061207	0.94[ASN][1000 genomes]
rs10062045	0.94[ASN][1000 genomes]
rs10068969	0.94[ASN][1000 genomes]
rs10068974	0.94[ASN][1000 genomes]
rs10069313	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10069608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10069773	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10071058	0.94[ASN][1000 genomes]
rs10071862	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10071986	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10076627	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10077058	0.94[ASN][1000 genomes]
rs10077309	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10077774	0.94[ASN][1000 genomes]
rs10079307	0.89[ASN][1000 genomes]
rs10477480	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10478081	0.92[EUR][1000 genomes]
rs10478083	0.92[EUR][1000 genomes]
rs10478084	0.92[EUR][1000 genomes]
rs10478086	0.94[ASN][1000 genomes]
rs10515444	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11288564	0.84[EUR][1000 genomes]
rs12189127	0.89[ASN][1000 genomes]
rs12189152	0.89[ASN][1000 genomes]
rs13354202	0.89[ASN][1000 genomes]
rs13354699	0.94[ASN][1000 genomes]
rs13355990	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13358734	0.81[AFR][1000 genomes]
rs1524423	0.94[ASN][1000 genomes]
rs1524424	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17134426	0.94[ASN][1000 genomes]
rs17134429	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17134454	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17134475	1.00[EUR][1000 genomes]
rs17134478	0.94[ASN][1000 genomes]
rs17134479	0.94[ASN][1000 genomes]
rs17134521	1.00[EUR][1000 genomes]
rs2416285	0.94[ASN][1000 genomes]
rs28497526	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28626415	0.94[ASN][1000 genomes]
rs28631626	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28716575	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs28806604	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28831993	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28836584	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28851506	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs28887818	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2900063	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3985058	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4441914	0.94[ASN][1000 genomes]
rs6594594	0.94[ASN][1000 genomes]
rs6594596	0.94[ASN][1000 genomes]
rs6594597	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6860402	0.94[ASN][1000 genomes]
rs6861534	0.94[ASN][1000 genomes]
rs6863610	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6865127	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6865715	0.92[EUR][1000 genomes]
rs6873453	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6878092	0.94[ASN][1000 genomes]
rs6878158	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6879906	0.94[ASN][1000 genomes]
rs6883585	0.94[ASN][1000 genomes]
rs6883800	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6890476	0.92[EUR][1000 genomes]
rs6895299	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs721054	0.94[ASN][1000 genomes]
rs721055	0.94[ASN][1000 genomes]
rs73214254	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73214256	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73214261	0.94[ASN][1000 genomes]
rs73214264	0.94[ASN][1000 genomes]
rs73214270	0.94[ASN][1000 genomes]
rs73214272	0.94[ASN][1000 genomes]
rs73214274	0.94[ASN][1000 genomes]
rs73216591	0.94[ASN][1000 genomes]
rs73218321	0.94[ASN][1000 genomes]
rs73218339	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73218340	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73218343	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73218347	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73218348	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73218349	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73220307	0.94[ASN][1000 genomes]
rs7702830	0.89[ASN][1000 genomes]
rs7702999	0.94[ASN][1000 genomes]
rs7705094	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7706551	0.94[ASN][1000 genomes]
rs7706737	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7707028	0.94[ASN][1000 genomes]
rs7709879	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7709963	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7710041	0.94[ASN][1000 genomes]
rs7710063	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7710507	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7711662	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7714450	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7725728	0.94[ASN][1000 genomes]
rs7725742	0.94[ASN][1000 genomes]
rs7730739	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7733415	0.94[ASN][1000 genomes]
rs7736305	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7736457	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9326853	0.89[ASN][1000 genomes]
rs9654518	0.94[ASN][1000 genomes]
rs985873	0.94[ASN][1000 genomes]
rs986797	0.94[ASN][1000 genomes]
rs9885177	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9885182	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9885209	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9885211	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9885390	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv882714	chr5:111655382-111807579	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3324210	chr5:111754678-111757226	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111756600-111767200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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