Variant report

Variant	rs17134521
Chromosome Location	chr5:111770991-111770992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10036357	1.00[EUR][1000 genomes]
rs10056040	1.00[EUR][1000 genomes]
rs10059675	0.92[EUR][1000 genomes]
rs10061025	1.00[EUR][1000 genomes]
rs10069313	1.00[EUR][1000 genomes]
rs10069608	1.00[EUR][1000 genomes]
rs10069773	1.00[EUR][1000 genomes]
rs10071862	1.00[EUR][1000 genomes]
rs10071986	1.00[EUR][1000 genomes]
rs10076627	0.92[EUR][1000 genomes]
rs10077309	1.00[EUR][1000 genomes]
rs10477480	1.00[EUR][1000 genomes]
rs10478081	0.92[EUR][1000 genomes]
rs10478083	0.92[EUR][1000 genomes]
rs10478084	0.92[EUR][1000 genomes]
rs11288564	0.84[EUR][1000 genomes]
rs13355990	1.00[EUR][1000 genomes]
rs1524424	1.00[EUR][1000 genomes]
rs17134429	1.00[EUR][1000 genomes]
rs17134454	1.00[EUR][1000 genomes]
rs17134475	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs17134556	0.85[AFR][1000 genomes]
rs17134559	0.85[AFR][1000 genomes]
rs17134564	0.85[AFR][1000 genomes]
rs17134566	0.85[AFR][1000 genomes]
rs17134569	0.85[AFR][1000 genomes]
rs28497526	1.00[EUR][1000 genomes]
rs28631626	1.00[EUR][1000 genomes]
rs28806604	1.00[EUR][1000 genomes]
rs28831993	1.00[EUR][1000 genomes]
rs28836584	1.00[EUR][1000 genomes]
rs28887818	1.00[EUR][1000 genomes]
rs4090543	0.85[AFR][1000 genomes]
rs57536989	0.85[AFR][1000 genomes]
rs59911735	0.85[AFR][1000 genomes]
rs6594597	1.00[EUR][1000 genomes]
rs6863610	1.00[EUR][1000 genomes]
rs6865715	0.92[EUR][1000 genomes]
rs6873453	1.00[EUR][1000 genomes]
rs6878158	1.00[EUR][1000 genomes]
rs6883800	1.00[EUR][1000 genomes]
rs6890476	0.92[EUR][1000 genomes]
rs6895299	1.00[EUR][1000 genomes]
rs73214254	1.00[EUR][1000 genomes]
rs73214256	1.00[EUR][1000 genomes]
rs73214269	0.80[AFR][1000 genomes]
rs73218309	0.90[AFR][1000 genomes]
rs73218315	0.90[AFR][1000 genomes]
rs73218319	0.90[AFR][1000 genomes]
rs73218335	0.93[AFR][1000 genomes]
rs73218338	1.00[EUR][1000 genomes]
rs73218343	1.00[EUR][1000 genomes]
rs73218345	0.97[AFR][1000 genomes]
rs73220310	0.97[AFR][1000 genomes]
rs73220313	0.93[AFR][1000 genomes]
rs73222143	0.85[AFR][1000 genomes]
rs73222145	0.85[AFR][1000 genomes]
rs73222146	0.82[AFR][1000 genomes]
rs73222148	0.85[AFR][1000 genomes]
rs7446816	0.82[AFR][1000 genomes]
rs7705094	1.00[EUR][1000 genomes]
rs7706737	1.00[EUR][1000 genomes]
rs7709879	1.00[EUR][1000 genomes]
rs7709963	1.00[EUR][1000 genomes]
rs7710507	1.00[EUR][1000 genomes]
rs7711662	1.00[EUR][1000 genomes]
rs7714450	0.92[EUR][1000 genomes]
rs7730739	1.00[EUR][1000 genomes]
rs7736305	1.00[EUR][1000 genomes]
rs7736457	1.00[EUR][1000 genomes]
rs956273	0.85[AFR][1000 genomes]
rs9885177	1.00[EUR][1000 genomes]
rs9885182	0.92[EUR][1000 genomes]
rs9885209	0.92[EUR][1000 genomes]
rs9885211	0.92[EUR][1000 genomes]
rs9885390	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv882714	chr5:111655382-111807579	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111770400-111771000	Enhancers	Fetal Stomach	stomach
2	chr5:111770600-111771000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:111770600-111771800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:111770600-111772400	Enhancers	Placenta	Placenta
5	chr5:111770800-111771800	Weak transcription	Fetal Lung	lung

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