Variant report

Variant	rs7737030
Chromosome Location	chr5:112477294-112477295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112476798..112478381-chr5:112478430..112480202,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1443684	1.00[AFR][1000 genomes]
rs1443694	1.00[AFR][1000 genomes]
rs2416304	1.00[AFR][1000 genomes]
rs4705792	1.00[AFR][1000 genomes]
rs4705793	0.83[AFR][1000 genomes]
rs6886988	1.00[AFR][1000 genomes]
rs6887809	1.00[AFR][1000 genomes]
rs7712720	1.00[AFR][1000 genomes]
rs935165	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112451000-112478800	Weak transcription	Aorta	Aorta
2	chr5:112467400-112493200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:112470200-112491000	Weak transcription	Fetal Kidney	kidney
4	chr5:112470600-112482000	Weak transcription	Fetal Heart	heart
5	chr5:112474800-112482400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:112475600-112479200	Strong transcription	Liver	Liver
7	chr5:112475800-112479600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:112476200-112477600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:112476200-112478400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:112476200-112478400	Enhancers	NHDF-Ad	bronchial
11	chr5:112476200-112479400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr5:112476400-112477400	Genic enhancers	Ovary	ovary
13	chr5:112476400-112477400	Enhancers	Right Atrium	heart
14	chr5:112476400-112477400	Enhancers	NHLF	lung
15	chr5:112476400-112477600	Enhancers	Brain Substantia Nigra	brain
16	chr5:112476400-112478000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr5:112476400-112478000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr5:112476400-112478000	Enhancers	Left Ventricle	heart
19	chr5:112476400-112478200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:112476400-112478200	Enhancers	HSMMtube	muscle
21	chr5:112476400-112478600	Enhancers	Osteobl	bone
22	chr5:112476600-112477400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:112476600-112477400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr5:112476600-112477400	Strong transcription	Esophagus	oesophagus
25	chr5:112476600-112477400	Enhancers	Placenta	Placenta
26	chr5:112476600-112477400	Strong transcription	Fetal Stomach	stomach
27	chr5:112476600-112477600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr5:112476600-112477600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr5:112476600-112477800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr5:112476600-112478000	Enhancers	Brain Hippocampus Middle	brain
31	chr5:112476600-112478000	Enhancers	NH-A	brain
32	chr5:112476600-112478600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr5:112476600-112478600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr5:112476600-112478800	Enhancers	HMEC	breast
35	chr5:112476600-112478800	Genic enhancers	NHEK	skin
36	chr5:112476800-112477400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr5:112476800-112477400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:112476800-112477400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr5:112476800-112477400	Enhancers	Fetal Muscle Leg	muscle
40	chr5:112476800-112477400	Enhancers	HSMM	muscle
41	chr5:112476800-112477600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr5:112476800-112478000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr5:112476800-112478400	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr5:112476800-112478800	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr5:112476800-112478800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr5:112476800-112478800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr5:112476800-112479800	Weak transcription	Right Ventricle	heart
48	chr5:112477000-112477400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr5:112477000-112477400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr5:112477000-112477400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links