Variant report

Variant	rs935165
Chromosome Location	chr5:112512625-112512626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112509608..112512785-chr5:112516930..112518881,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1443684	1.00[AFR][1000 genomes]
rs1443694	1.00[AFR][1000 genomes]
rs2416304	1.00[AFR][1000 genomes]
rs4705792	1.00[AFR][1000 genomes]
rs4705793	0.83[AFR][1000 genomes]
rs6886988	1.00[AFR][1000 genomes]
rs6887809	1.00[AFR][1000 genomes]
rs7712720	1.00[AFR][1000 genomes]
rs7737030	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112500800-112513800	Weak transcription	Lung	lung
2	chr5:112500800-112518400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:112503000-112513600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:112503200-112514000	Weak transcription	Fetal Stomach	stomach
5	chr5:112503800-112514800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:112504800-112525600	Weak transcription	Esophagus	oesophagus
7	chr5:112505800-112521400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:112506200-112518200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:112506400-112521600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:112507000-112526000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:112509800-112513800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:112509800-112513800	Weak transcription	Fetal Kidney	kidney
13	chr5:112510600-112513600	Enhancers	Fetal Heart	heart
14	chr5:112511600-112513000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:112512000-112513000	Strong transcription	NHEK	skin
16	chr5:112512000-112514200	Enhancers	Right Atrium	heart
17	chr5:112512000-112515600	Enhancers	Liver	Liver
18	chr5:112512000-112515800	Enhancers	Left Ventricle	heart
19	chr5:112512000-112516200	Enhancers	Right Ventricle	heart
20	chr5:112512200-112512800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr5:112512200-112513000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:112512200-112513600	Weak transcription	Fetal Lung	lung
23	chr5:112512200-112513800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:112512200-112515800	Enhancers	Psoas Muscle	Psoas
25	chr5:112512400-112514400	Weak transcription	Stomach Mucosa	stomach
26	chr5:112512600-112512800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr5:112512600-112513600	Weak transcription	Ovary	ovary
28	chr5:112512600-112513600	Weak transcription	HSMMtube	muscle
29	chr5:112512600-112513800	Weak transcription	Adipose Nuclei	Adipose
30	chr5:112512600-112513800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr5:112512600-112513800	Weak transcription	Fetal Muscle Leg	muscle
32	chr5:112512600-112521400	Weak transcription	Brain Angular Gyrus	brain

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