Variant report

Variant	rs773764
Chromosome Location	chr5:14290689-14290690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11133785	0.83[EUR][1000 genomes]
rs11949756	0.82[CEU][hapmap]
rs11950000	0.82[CEU][hapmap]
rs12109756	0.82[CEU][hapmap]
rs12110161	0.82[CEU][hapmap]
rs16903375	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16903389	0.95[EUR][1000 genomes]
rs16903421	0.82[CEU][hapmap];0.92[GIH][hapmap]
rs16903453	0.82[CEU][hapmap];0.83[GIH][hapmap]
rs16903460	0.82[CEU][hapmap]
rs16903464	0.82[CEU][hapmap]
rs1697168	1.00[EUR][1000 genomes]
rs1697170	0.97[EUR][1000 genomes]
rs2463803	1.00[CEU][hapmap];0.81[YRI][hapmap];0.97[EUR][1000 genomes]
rs26290	0.82[ASW][hapmap]
rs33028	0.82[ASW][hapmap]
rs58383010	0.95[EUR][1000 genomes]
rs60768136	0.83[EUR][1000 genomes]
rs62344973	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62344976	0.83[EUR][1000 genomes]
rs62346588	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62346590	0.95[EUR][1000 genomes]
rs6879505	0.95[EUR][1000 genomes]
rs6887831	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs696290	0.83[EUR][1000 genomes]
rs697558	1.00[EUR][1000 genomes]
rs697559	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7710935	0.83[EUR][1000 genomes]
rs7731443	0.83[EUR][1000 genomes]
rs7732548	1.00[EUR][1000 genomes]
rs773765	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs773766	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830209	chr5:14154989-14301758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv948355	chr5:14160447-14395478	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830210	chr5:14255039-14431552	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14265200-14293000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:14268600-14291000	Weak transcription	Fetal Kidney	kidney
3	chr5:14270200-14290800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:14270400-14293000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:14270400-14305200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:14270400-14313600	Weak transcription	Small Intestine	intestine
7	chr5:14270800-14293000	Weak transcription	Brain Hippocampus Middle	brain
8	chr5:14271000-14295800	Weak transcription	Brain Angular Gyrus	brain
9	chr5:14276800-14290800	Weak transcription	Esophagus	oesophagus
10	chr5:14277200-14291000	Weak transcription	Brain Anterior Caudate	brain
11	chr5:14278000-14341200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr5:14278600-14296200	Strong transcription	NH-A	brain
13	chr5:14279600-14295600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:14279800-14293200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:14279800-14294600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:14280000-14295000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:14281400-14291000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr5:14282400-14293400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr5:14283000-14319400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:14284200-14296200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr5:14284800-14290800	Weak transcription	Aorta	Aorta
22	chr5:14284800-14291000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr5:14285000-14292800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr5:14285000-14295400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr5:14285200-14290800	Weak transcription	Ovary	ovary
26	chr5:14285200-14291200	Weak transcription	Thymus	Thymus
27	chr5:14285200-14293000	Weak transcription	Fetal Lung	lung
28	chr5:14285400-14291000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr5:14285400-14293000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr5:14285600-14292800	Strong transcription	NHLF	lung
31	chr5:14285800-14304200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr5:14286000-14294000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr5:14286200-14290800	Weak transcription	Brain Germinal Matrix	brain
34	chr5:14286200-14291800	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr5:14286200-14292600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr5:14286200-14302200	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr5:14286200-14320400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:14286400-14292000	Strong transcription	Fetal Intestine Small	intestine
39	chr5:14286400-14302000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr5:14286400-14321000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr5:14286600-14290800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:14286600-14292800	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr5:14286600-14302200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr5:14286600-14314400	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr5:14286800-14291600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr5:14286800-14293200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr5:14286800-14294000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr5:14286800-14295600	Strong transcription	Stomach Smooth Muscle	stomach
49	chr5:14286800-14301800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr5:14286800-14301800	Strong transcription	Liver	Liver

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