Variant report

Variant	rs773765
Chromosome Location	chr5:14291614-14291615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr5:14291339-14291647	HepG2	liver:	n/a	chr5:14291512-14291523 chr5:14291511-14291524 chr5:14291513-14291522
2	CEBPB	chr5:14291360-14291658	IMR90	lung:	n/a	chr5:14291512-14291523 chr5:14291511-14291524 chr5:14291513-14291522

Variant related genes	Relation type
TRIO	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11133785	0.83[EUR][1000 genomes]
rs11949756	0.82[CEU][hapmap]
rs11950000	0.82[CEU][hapmap]
rs12109756	0.82[CEU][hapmap]
rs12110161	0.82[CEU][hapmap]
rs16903375	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16903389	0.95[EUR][1000 genomes]
rs16903421	0.82[CEU][hapmap];0.92[GIH][hapmap]
rs16903453	0.82[CEU][hapmap];0.83[GIH][hapmap]
rs16903460	0.82[CEU][hapmap]
rs16903464	0.82[CEU][hapmap]
rs1697168	1.00[EUR][1000 genomes]
rs1697170	0.97[EUR][1000 genomes]
rs2463803	1.00[CEU][hapmap];0.81[YRI][hapmap];0.97[EUR][1000 genomes]
rs26290	0.82[ASW][hapmap]
rs33028	0.82[ASW][hapmap]
rs58383010	0.95[EUR][1000 genomes]
rs60768136	0.83[EUR][1000 genomes]
rs62344973	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62344976	0.83[EUR][1000 genomes]
rs62346588	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62346590	0.95[EUR][1000 genomes]
rs6879505	0.95[EUR][1000 genomes]
rs6887831	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs696290	0.83[EUR][1000 genomes]
rs697558	1.00[EUR][1000 genomes]
rs697559	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7710935	0.83[EUR][1000 genomes]
rs7731443	0.83[EUR][1000 genomes]
rs7732548	1.00[EUR][1000 genomes]
rs773764	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs773766	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830209	chr5:14154989-14301758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv948355	chr5:14160447-14395478	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830210	chr5:14255039-14431552	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14265200-14293000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:14270400-14293000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr5:14270400-14305200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:14270400-14313600	Weak transcription	Small Intestine	intestine
5	chr5:14270800-14293000	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:14271000-14295800	Weak transcription	Brain Angular Gyrus	brain
7	chr5:14278000-14341200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:14278600-14296200	Strong transcription	NH-A	brain
9	chr5:14279600-14295600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:14279800-14293200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:14279800-14294600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:14280000-14295000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:14282400-14293400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr5:14283000-14319400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:14284200-14296200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:14285000-14292800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:14285000-14295400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:14285200-14293000	Weak transcription	Fetal Lung	lung
19	chr5:14285400-14293000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr5:14285600-14292800	Strong transcription	NHLF	lung
21	chr5:14285800-14304200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:14286000-14294000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr5:14286200-14291800	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr5:14286200-14292600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:14286200-14302200	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr5:14286200-14320400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:14286400-14292000	Strong transcription	Fetal Intestine Small	intestine
28	chr5:14286400-14302000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr5:14286400-14321000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr5:14286600-14292800	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr5:14286600-14302200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:14286600-14314400	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr5:14286800-14293200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr5:14286800-14294000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr5:14286800-14295600	Strong transcription	Stomach Smooth Muscle	stomach
36	chr5:14286800-14301800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr5:14286800-14301800	Strong transcription	Liver	Liver
38	chr5:14287000-14297800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr5:14287000-14302000	Strong transcription	Fetal Stomach	stomach
40	chr5:14287000-14315000	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr5:14287200-14292000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr5:14287200-14292400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr5:14287400-14296200	Strong transcription	Osteobl	bone
44	chr5:14287600-14292600	Weak transcription	Psoas Muscle	Psoas
45	chr5:14287600-14292800	Weak transcription	Brain Substantia Nigra	brain
46	chr5:14287600-14293000	Strong transcription	HSMM	muscle
47	chr5:14287600-14293200	Weak transcription	Colon Smooth Muscle	Colon
48	chr5:14287600-14293200	Weak transcription	Pancreas	Pancrea
49	chr5:14287800-14292000	Weak transcription	Fetal Heart	heart
50	chr5:14287800-14293200	Strong transcription	Adipose Nuclei	Adipose

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