Variant report

Variant	rs7738308
Chromosome Location	chr6:36578295-36578296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36575353..36578968-chr6:36688808..36692284,3	MCF-7	breast:
2	chr6:36577655..36580649-chr6:36645299..36647477,2	MCF-7	breast:
3	chr6:36577436..36580901-chr6:36648470..36651354,3	K562	blood:
4	chr6:36503698..36505309-chr6:36575807..36578359,2	MCF-7	breast:
5	chr6:36576769..36579207-chr6:36667077..36668814,2	K562	blood:
6	chr6:36576949..36579630-chr6:36689690..36691532,2	K562	blood:
7	chr6:36539071..36541420-chr6:36578039..36580553,2	K562	blood:
8	chr6:36575719..36578396-chr6:36703427..36706360,2	K562	blood:
9	chr6:36577411..36580093-chr6:36598443..36601341,2	K562	blood:
10	chr6:36577490..36580113-chr6:36675769..36678702,3	K562	blood:
11	chr6:36574853..36581451-chr6:36644915..36649997,7	K562	blood:
12	chr6:36577343..36580259-chr6:36718203..36721182,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction
ENSG00000220349	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs7754099	1.00[YRI][hapmap]
rs9296186	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470346	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470347	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9470348	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9470356	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470369	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36566800-36582800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:36567000-36580400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:36567600-36578400	Genic enhancers	Liver	Liver
4	chr6:36568000-36581400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr6:36568200-36580200	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:36568600-36584600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:36568800-36581200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:36569000-36581600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:36569400-36581600	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:36569600-36581400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:36569600-36585000	Strong transcription	Fetal Thymus	thymus
12	chr6:36570000-36581800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr6:36570200-36581200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:36570400-36581600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:36570400-36584800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:36570600-36582000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:36570800-36580200	Strong transcription	NH-A	brain
18	chr6:36571000-36581600	Strong transcription	Primary B cells from cord blood	blood
19	chr6:36571200-36581600	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr6:36571200-36582200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:36571600-36585000	Strong transcription	Thymus	Thymus
22	chr6:36571800-36582200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:36572000-36578800	Genic enhancers	Primary T cells fromperipheralblood	blood
24	chr6:36572000-36579400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:36572000-36581800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:36572000-36583200	Strong transcription	Fetal Stomach	stomach
27	chr6:36572600-36580400	Strong transcription	HUVEC	blood vessel
28	chr6:36572600-36581400	Strong transcription	Dnd41	blood
29	chr6:36572600-36582200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:36573200-36581200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr6:36573600-36582800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:36573800-36578800	Genic enhancers	Fetal Intestine Large	intestine
33	chr6:36574000-36579000	Genic enhancers	Fetal Intestine Small	intestine
34	chr6:36574000-36581600	Strong transcription	Brain Germinal Matrix	brain
35	chr6:36574200-36580200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:36574200-36580400	Strong transcription	HSMM	muscle
37	chr6:36574600-36580000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr6:36574600-36581200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:36575200-36579000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:36575200-36579000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr6:36575200-36580000	Strong transcription	Primary hematopoietic stem cells	blood
42	chr6:36575200-36580400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:36575400-36581600	Strong transcription	Fetal Muscle Trunk	muscle
44	chr6:36575600-36580000	Strong transcription	NHDF-Ad	bronchial
45	chr6:36575600-36583200	Weak transcription	Hela-S3	cervix
46	chr6:36576000-36578600	Weak transcription	Ovary	ovary
47	chr6:36576000-36579800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:36576000-36580200	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr6:36576000-36580400	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr6:36576000-36580400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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