Variant report

Variant	rs9470346
Chromosome Location	chr6:36571154-36571155
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36513256..36514925-chr6:36570218..36572859,3	K562	blood:
2	chr6:36570219..36573404-chr6:36646918..36650255,3	K562	blood:
3	chr6:36510024..36516034-chr6:36569455..36577118,9	MCF-7	breast:
4	chr6:36409175..36411337-chr6:36571136..36573196,4	K562	blood:
5	chr6:36389514..36391373-chr6:36570790..36573256,2	K562	blood:
6	chr6:36525931..36527462-chr6:36570238..36572725,2	MCF-7	breast:
7	chr6:36559895..36571260-chr6:36642384..36648914,19	MCF-7	breast:
8	chr6:36339409..36341953-chr6:36569258..36572239,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112079	Chromatin interaction
ENSG00000124762	Chromatin interaction
ENSG00000179165	Chromatin interaction
ENSG00000112078	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs7738308	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754099	1.00[YRI][hapmap]
rs9296186	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470347	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9470348	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9470356	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470369	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36562600-36571800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:36564000-36571600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
3	chr6:36565400-36574200	Genic enhancers	Fetal Heart	heart
4	chr6:36566600-36577400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:36566800-36577800	Strong transcription	H9 Cell Line	embryonic stem cell
6	chr6:36566800-36582800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:36567000-36574400	Genic enhancers	A549	lung
8	chr6:36567000-36580400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:36567600-36578400	Genic enhancers	Liver	Liver
10	chr6:36567800-36575600	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:36568000-36572200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:36568000-36574200	Genic enhancers	Rectal Smooth Muscle	rectum
13	chr6:36568000-36575200	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr6:36568000-36576200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:36568000-36577800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:36568000-36581400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr6:36568200-36572000	Genic enhancers	Brain Substantia Nigra	brain
18	chr6:36568200-36572200	Strong transcription	Left Ventricle	heart
19	chr6:36568200-36573000	Strong transcription	Fetal Muscle Trunk	muscle
20	chr6:36568200-36573600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:36568200-36574200	Genic enhancers	Muscle Satellite Cultured Cells	--
22	chr6:36568200-36574200	Genic enhancers	Duodenum Smooth Muscle	Duodenum
23	chr6:36568200-36574400	Strong transcription	Colonic Mucosa	Colon
24	chr6:36568200-36575200	Strong transcription	Placenta Amnion	Placenta Amnion
25	chr6:36568200-36577400	Genic enhancers	NHEK	skin
26	chr6:36568200-36580200	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:36568400-36571200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
28	chr6:36568400-36575800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:36568600-36571200	Strong transcription	Fetal Intestine Large	intestine
30	chr6:36568600-36573600	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr6:36568600-36574000	Genic enhancers	Colon Smooth Muscle	Colon
32	chr6:36568600-36574200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr6:36568600-36576000	Genic enhancers	Osteobl	bone
34	chr6:36568600-36576200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr6:36568600-36577600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:36568600-36578000	Genic enhancers	HepG2	liver
37	chr6:36568600-36584600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:36568800-36571200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:36568800-36571400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:36568800-36572000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:36568800-36574000	Strong transcription	Fetal Kidney	kidney
42	chr6:36568800-36575400	Genic enhancers	Duodenum Mucosa	Duodenum
43	chr6:36568800-36581200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:36569000-36581600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:36569200-36571200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:36569200-36574200	Genic enhancers	Adipose Nuclei	Adipose
47	chr6:36569200-36574200	Strong transcription	K562	blood
48	chr6:36569200-36574800	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr6:36569200-36575600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
50	chr6:36569400-36571200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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