Variant report

Variant	rs7738402
Chromosome Location	chr6:5057399-5057400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:5057399-5057661	GM12892	blood:	n/a	chr6:5057522-5057540
2	CTCF	chr6:5057369-5057644	A549	lung:	n/a	chr6:5057522-5057540
3	SMC3	chr6:5057348-5057737	K562	blood:	n/a	n/a
4	MAZ	chr6:5057385-5057657	HepG2	liver:	n/a	n/a
5	CTCF	chr6:5057277-5057667	HepG2	liver:	n/a	chr6:5057522-5057540
6	CTCF	chr6:5057358-5057680	HepG2	liver:	n/a	chr6:5057522-5057540
7	CTCF	chr6:5057378-5057671	Hela-S3	cervix:	n/a	chr6:5057522-5057540
8	RAD21	chr6:5057384-5057723	GM12878	blood:	n/a	chr6:5057523-5057542
9	CTCF	chr6:5057391-5057661	Fibrobl	skin:	n/a	chr6:5057522-5057540
10	CTCF	chr6:5057382-5057670	Medullo	brain:	n/a	chr6:5057522-5057540
11	MAZ	chr6:5057356-5057731	K562	blood:	n/a	n/a
12	RAD21	chr6:5057360-5057648	GM12878	blood:	n/a	chr6:5057523-5057542
13	RAD21	chr6:5057360-5057616	SK-N-SH_RA	brain:	n/a	chr6:5057523-5057542
14	RAD21	chr6:5057231-5057697	A549	lung:	n/a	chr6:5057523-5057542
15	CTCF	chr6:5057353-5057724	K562	blood:	n/a	chr6:5057522-5057540
16	CTCF	chr6:5057384-5057680	MCF-7	breast:	n/a	chr6:5057522-5057540
17	CTCF	chr6:5057397-5057646	MCF-7	breast:	n/a	chr6:5057522-5057540
18	RAD21	chr6:5057252-5057863	MCF-7	breast:	n/a	chr6:5057523-5057542
19	CTCF	chr6:5057381-5057676	Gliobla	brain:	n/a	chr6:5057522-5057540
20	CTCF	chr6:5057273-5057728	SK-N-SH	brain:	n/a	chr6:5057522-5057540
21	CTCF	chr6:5057392-5057682	GM19240	blood:	n/a	chr6:5057522-5057540
22	CTCF	chr6:5057395-5057660	GM12891	blood:	n/a	chr6:5057522-5057540
23	ARID3A	chr6:5057191-5057683	HepG2	liver:	n/a	n/a
24	CTCF	chr6:5057365-5057693	A549	lung:	n/a	chr6:5057522-5057540
25	RAD21	chr6:5057319-5057704	H1-hESC	embryonic stem cell:	n/a	chr6:5057523-5057542
26	CTCF	chr6:5057314-5057721	K562	blood:	n/a	chr6:5057522-5057540
27	CTCF	chr6:5057285-5057682	MCF-7	breast:	n/a	chr6:5057522-5057540
28	RAD21	chr6:5057248-5057817	SK-N-SH	brain:	n/a	chr6:5057523-5057542
29	CTCF	chr6:5057341-5057621	A549	lung:	n/a	chr6:5057522-5057540
30	ZNF143	chr6:5057380-5057622	GM12878	blood:	n/a	n/a
31	CTCF	chr6:5057329-5057734	GM12878	blood:	n/a	chr6:5057522-5057540
32	CTCF	chr6:5057387-5057674	GM19238	blood:	n/a	chr6:5057522-5057540
33	JUND	chr6:5057374-5057638	H1-hESC	embryonic stem cell:	n/a	n/a
34	MAX	chr6:5057382-5057640	NB4	blood:	n/a	n/a
35	MYBL2	chr6:5057283-5057815	HepG2	liver:	n/a	n/a
36	MAX	chr6:5057334-5057656	K562	blood:	n/a	n/a
37	CTCF	chr6:5057396-5057653	MCF-7	breast:	n/a	chr6:5057522-5057540
38	RAD21	chr6:5057258-5057770	H1-hESC	embryonic stem cell:	n/a	chr6:5057523-5057542
39	RAD21	chr6:5057249-5057742	HCT-116	colon:	n/a	chr6:5057523-5057542
40	ZNF143	chr6:5057375-5057712	H1-hESC	embryonic stem cell:	n/a	n/a
41	RAD21	chr6:5057216-5057855	HepG2	liver:	n/a	chr6:5057523-5057542
42	CTCF	chr6:5057235-5057857	HCT-116	colon:	n/a	chr6:5057522-5057540
43	RAD21	chr6:5057350-5057742	IMR90	lung:	n/a	chr6:5057523-5057542
44	SIN3A	chr6:5057356-5057671	H1-hESC	embryonic stem cell:	n/a	n/a
45	YY1	chr6:5057373-5057793	H1-hESC	embryonic stem cell:	n/a	n/a
46	CHD2	chr6:5057387-5057691	H1-hESC	embryonic stem cell:	n/a	n/a
47	RAD21	chr6:5057345-5057700	SK-N-SH_RA	brain:	n/a	chr6:5057523-5057542
48	YY1	chr6:5057341-5057674	H1-hESC	embryonic stem cell:	n/a	n/a
49	CTCF	chr6:5057385-5057661	MCF-7	breast:	n/a	chr6:5057522-5057540
50	RAD21	chr6:5057375-5057697	K562	blood:	n/a	chr6:5057523-5057542

No.	Distal block	Cell Line	Cell type
1	chr6:5056624..5057532-chr6:5398465..5398983,2	K562	blood:
2	chr6:5057040..5058030-chr6:5115128..5116001,3	MCF-7	breast:
3	chr6:5056866..5057674-chr6:5135884..5136820,3	MCF-7	breast:
4	chr6:5030674..5031313-chr6:5057093..5058040,2	K562	blood:
5	chr6:5056626..5057929-chr6:5115101..5116066,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271978	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1033905	chr6:4955826-5080904	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv600872	chr6:4975313-5342190	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv1031837	chr6:4996667-5418726	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
8	nsv1017380	chr6:5007870-5152551	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1024028	chr6:5057399-5081990	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5054800-5058600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:5054800-5059800	Weak transcription	Fetal Kidney	kidney
3	chr6:5055200-5061400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:5057200-5057800	Enhancers	HUES48 Cell Line	embryonic stem cell

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