Variant report

Variant	rs7740214
Chromosome Location	chr6:143544647-143544648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143544038..143546858-chr6:143561031..143564027,2	K562	blood:
2	chr6:143520892..143523163-chr6:143544136..143548035,3	K562	blood:
3	chr6:143544257..143547136-chr6:143557817..143559656,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12205812	0.83[JPT][hapmap]
rs12207891	0.83[JPT][hapmap]
rs12213958	0.81[ASN][1000 genomes]
rs4896623	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896626	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9373381	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv275228	chr6:143539833-143549921	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143514200-143545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:143514400-143545200	Weak transcription	HMEC	breast
3	chr6:143516000-143545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:143525800-143545800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:143527400-143552000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:143535000-143545200	Weak transcription	Pancreas	Pancrea
8	chr6:143535000-143549600	Weak transcription	Lung	lung
9	chr6:143535000-143551000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
11	chr6:143536200-143546000	Weak transcription	Right Ventricle	heart
12	chr6:143537800-143547200	Strong transcription	K562	blood
13	chr6:143540800-143545200	Weak transcription	NHEK	skin
14	chr6:143541000-143545400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:143541200-143550800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:143541400-143545200	Weak transcription	Left Ventricle	heart
17	chr6:143541600-143546400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:143541800-143545800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:143542000-143545400	Enhancers	Rectal Smooth Muscle	rectum
20	chr6:143542000-143545600	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr6:143542400-143545200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:143542400-143545200	Enhancers	Psoas Muscle	Psoas
23	chr6:143542400-143545400	Enhancers	Fetal Stomach	stomach
24	chr6:143542600-143545000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:143542600-143545200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr6:143542600-143545400	Enhancers	Fetal Brain Male	brain
27	chr6:143542600-143546200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:143542800-143545600	Enhancers	Fetal Lung	lung
29	chr6:143543000-143545600	Enhancers	Fetal Muscle Leg	muscle
30	chr6:143543000-143545600	Enhancers	Ovary	ovary
31	chr6:143543200-143545600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:143543200-143545600	Enhancers	Fetal Intestine Small	intestine
33	chr6:143543400-143545200	Enhancers	Fetal Heart	heart
34	chr6:143543400-143545400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:143543600-143545000	Weak transcription	Right Atrium	heart
36	chr6:143543600-143545200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:143544200-143544800	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr6:143544200-143545600	Enhancers	Liver	Liver
39	chr6:143544200-143545600	Enhancers	Stomach Smooth Muscle	stomach
40	chr6:143544200-143545600	Enhancers	NHDF-Ad	bronchial
41	chr6:143544200-143546000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:143544200-143546000	Enhancers	HepG2	liver
43	chr6:143544400-143544800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:143544400-143545200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr6:143544400-143545200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:143544400-143545200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:143544400-143545600	Enhancers	Small Intestine	intestine
48	chr6:143544400-143545800	Enhancers	NHLF	lung
49	chr6:143544400-143554600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr6:143544600-143545000	Weak transcription	Adipose Nuclei	Adipose

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