Variant report

Variant	rs12205812
Chromosome Location	chr6:143565660-143565661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143550057..143552766-chr6:143564478..143566582,2	K562	blood:
2	chr6:143557083..143562017-chr6:143562858..143567253,5	K562	blood:
3	chr6:143565573..143568221-chr6:143568963..143571778,2	MCF-7	breast:
4	chr6:143558615..143561242-chr6:143564166..143566111,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10457047	1.00[CEU][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes]
rs10457745	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10484580	1.00[CEU][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs12189733	0.90[EUR][1000 genomes]
rs12189942	1.00[CEU][hapmap];0.80[CHB][hapmap];0.90[EUR][1000 genomes]
rs12189943	0.95[EUR][1000 genomes]
rs12190307	1.00[CEU][hapmap]
rs12206292	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12207891	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17591455	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7740214	0.83[JPT][hapmap]
rs7742280	1.00[CEU][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9321897	1.00[CEU][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs9484719	1.00[CEU][hapmap];0.82[CHD][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs9484720	1.00[CEU][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes]
rs9496556	1.00[CEU][hapmap];0.84[CHD][hapmap];0.80[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs9496557	0.90[EUR][1000 genomes]
rs9496558	1.00[CEU][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
3	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:143546000-143576200	Weak transcription	HepG2	liver
5	chr6:143546200-143571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:143550200-143570400	Weak transcription	Fetal Intestine Large	intestine
7	chr6:143554200-143581400	Weak transcription	Psoas Muscle	Psoas
8	chr6:143557600-143574000	Weak transcription	Left Ventricle	heart
9	chr6:143557600-143575200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:143557800-143567000	Weak transcription	Fetal Intestine Small	intestine
11	chr6:143562000-143566200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:143562600-143567800	Weak transcription	Osteobl	bone
13	chr6:143562600-143574200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:143562600-143579000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:143563400-143577200	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:143563400-143579800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:143563600-143569600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:143563800-143569600	Weak transcription	Liver	Liver
19	chr6:143564200-143583000	Weak transcription	Pancreas	Pancrea
20	chr6:143565200-143566600	Weak transcription	K562	blood
21	chr6:143565200-143569400	Weak transcription	NHEK	skin
22	chr6:143565200-143573800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:143565200-143579400	Weak transcription	Ovary	ovary
24	chr6:143565600-143568400	Weak transcription	Fetal Heart	heart
25	chr6:143565600-143570400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:143565600-143578200	Weak transcription	Esophagus	oesophagus

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