Variant report

Variant	rs17591455
Chromosome Location	chr6:143593353-143593354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10457047	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10457745	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10484580	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12189733	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12189942	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12189943	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12190307	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12205812	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12206292	0.85[JPT][hapmap]
rs12207891	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7742280	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9321897	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9484719	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9484720	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9496556	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9496557	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9496558	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:143583400-143606000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:143583800-143615400	Weak transcription	K562	blood
4	chr6:143589000-143607400	Weak transcription	Aorta	Aorta
5	chr6:143591400-143593400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:143591400-143593600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:143591400-143605200	Weak transcription	Liver	Liver
8	chr6:143592000-143593400	Enhancers	Rectal Smooth Muscle	rectum
9	chr6:143592200-143593600	Enhancers	NHDF-Ad	bronchial
10	chr6:143592200-143593800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:143592200-143605600	Weak transcription	Adipose Nuclei	Adipose
12	chr6:143592600-143593400	Weak transcription	HMEC	breast
13	chr6:143592600-143593600	Weak transcription	Fetal Stomach	stomach
14	chr6:143592600-143594600	Weak transcription	HSMM	muscle
15	chr6:143592800-143595000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:143593200-143606800	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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