Variant report

Variant	rs9484719
Chromosome Location	chr6:143609638-143609639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143597460..143598966-chr6:143607204..143609984,2	K562	blood:
2	chr6:143603471..143605267-chr6:143607615..143610028,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10457047	1.00[CEU][hapmap];0.94[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10457745	0.92[EUR][1000 genomes]
rs10484580	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12189733	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12189942	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12189943	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12190307	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12205812	1.00[CEU][hapmap];0.82[CHD][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs12207891	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[EUR][1000 genomes]
rs17591455	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7742280	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9321897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9484720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496556	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9496557	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9496558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3474294	chr6:143606767-143611394	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3474295	chr6:143606932-143611286	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143583800-143615400	Weak transcription	K562	blood
2	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:143603000-143611000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:143603200-143616800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:143605200-143610400	Strong transcription	Liver	Liver
7	chr6:143605400-143614600	Weak transcription	NHDF-Ad	bronchial
8	chr6:143605600-143622000	Weak transcription	HepG2	liver
9	chr6:143606800-143611400	Weak transcription	Fetal Intestine Small	intestine
10	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:143608200-143611400	Weak transcription	Lung	lung
12	chr6:143608400-143610800	Weak transcription	NH-A	brain
13	chr6:143608400-143611200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:143608400-143620800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:143608600-143609800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:143608600-143620800	Weak transcription	Left Ventricle	heart
17	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
18	chr6:143608800-143610600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:143608800-143612400	Weak transcription	Fetal Stomach	stomach
20	chr6:143608800-143619800	Weak transcription	HMEC	breast
21	chr6:143608800-143624200	Weak transcription	Ovary	ovary
22	chr6:143608800-143629400	Weak transcription	NHEK	skin
23	chr6:143609000-143611400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:143609200-143609800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:143609200-143610000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr6:143609200-143610000	Enhancers	H1 Cell Line	embryonic stem cell
27	chr6:143609200-143610000	Enhancers	H9 Cell Line	embryonic stem cell
28	chr6:143609200-143610000	Strong transcription	Brain Anterior Caudate	brain
29	chr6:143609200-143610000	Strong transcription	Fetal Intestine Large	intestine
30	chr6:143609200-143610600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr6:143609200-143611200	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr6:143609200-143611600	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:143609400-143610000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:143609400-143614800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:143609400-143622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:143609600-143610000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr6:143609600-143610000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr6:143609600-143610800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:143609600-143612400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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