Variant report

Variant	rs9496558
Chromosome Location	chr6:143608222-143608223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143597460..143598966-chr6:143607204..143609984,2	K562	blood:
2	chr6:143603471..143605267-chr6:143607615..143610028,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10457047	1.00[CEU][hapmap];0.80[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10457745	0.92[EUR][1000 genomes]
rs10484580	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12189733	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12189942	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12189943	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12190307	1.00[CEU][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12205812	1.00[CEU][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes]
rs12207891	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap];0.90[EUR][1000 genomes]
rs17591455	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7742280	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9321897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9484719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9484720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9496556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9496557	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3474294	chr6:143606767-143611394	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3474295	chr6:143606932-143611286	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:143583800-143615400	Weak transcription	K562	blood
3	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
4	chr6:143600600-143609200	Weak transcription	Brain Anterior Caudate	brain
5	chr6:143603000-143611000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:143603200-143609600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:143603200-143616800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:143604800-143609200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:143605000-143608400	Enhancers	Osteobl	bone
11	chr6:143605200-143608600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:143605200-143608800	Enhancers	Fetal Stomach	stomach
13	chr6:143605200-143610400	Strong transcription	Liver	Liver
14	chr6:143605400-143614600	Weak transcription	NHDF-Ad	bronchial
15	chr6:143605600-143608800	Enhancers	HMEC	breast
16	chr6:143605600-143622000	Weak transcription	HepG2	liver
17	chr6:143605800-143609400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:143606200-143609400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:143606400-143608400	Enhancers	Right Atrium	heart
20	chr6:143606600-143609200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:143606600-143609200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:143606800-143609000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:143606800-143609200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:143606800-143611400	Weak transcription	Fetal Intestine Small	intestine
25	chr6:143607000-143608400	Enhancers	NH-A	brain
26	chr6:143607000-143608800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr6:143607000-143608800	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr6:143607000-143609400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:143607200-143609400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr6:143607400-143608400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:143607400-143608400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:143607400-143608600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:143607400-143608600	Enhancers	Aorta	Aorta
34	chr6:143607400-143608800	Enhancers	Ovary	ovary
35	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:143607800-143608600	Enhancers	Left Ventricle	heart
37	chr6:143607800-143608800	Enhancers	Rectal Smooth Muscle	rectum
38	chr6:143607800-143608800	Enhancers	NHEK	skin
39	chr6:143607800-143609000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:143608000-143608400	Enhancers	Esophagus	oesophagus
41	chr6:143608000-143608400	Flanking Active TSS	Fetal Heart	heart
42	chr6:143608000-143608400	Enhancers	Stomach Smooth Muscle	stomach
43	chr6:143608000-143608800	Enhancers	Colon Smooth Muscle	Colon
44	chr6:143608000-143609200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr6:143608200-143609200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr6:143608200-143611400	Weak transcription	Lung	lung

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