Variant report

Variant	rs9496556
Chromosome Location	chr6:143606232-143606233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10457047	1.00[CEU][hapmap];0.97[GIH][hapmap];0.80[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10457745	0.92[EUR][1000 genomes]
rs10484580	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12189733	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12189942	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12189943	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12190307	1.00[CEU][hapmap];0.80[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12205812	1.00[CEU][hapmap];0.84[CHD][hapmap];0.80[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs12207891	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes]
rs17591455	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7742280	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9321897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9484719	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9484720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9496557	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:143583800-143615400	Weak transcription	K562	blood
3	chr6:143589000-143607400	Weak transcription	Aorta	Aorta
4	chr6:143593200-143606800	Weak transcription	NHEK	skin
5	chr6:143593400-143607000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
7	chr6:143600600-143609200	Weak transcription	Brain Anterior Caudate	brain
8	chr6:143603000-143611000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:143603200-143607000	Weak transcription	Fetal Heart	heart
10	chr6:143603200-143609600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:143603200-143616800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:143604600-143607800	Weak transcription	Lung	lung
14	chr6:143604800-143608000	Weak transcription	Esophagus	oesophagus
15	chr6:143604800-143608200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:143604800-143609200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:143605000-143606400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:143605000-143608400	Enhancers	Osteobl	bone
19	chr6:143605200-143606600	Enhancers	Colon Smooth Muscle	Colon
20	chr6:143605200-143608600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:143605200-143608800	Enhancers	Fetal Stomach	stomach
22	chr6:143605200-143610400	Strong transcription	Liver	Liver
23	chr6:143605400-143606400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:143605400-143606800	Enhancers	Fetal Muscle Leg	muscle
25	chr6:143605400-143607600	Enhancers	Stomach Smooth Muscle	stomach
26	chr6:143605400-143614600	Weak transcription	NHDF-Ad	bronchial
27	chr6:143605600-143606400	Enhancers	Adipose Nuclei	Adipose
28	chr6:143605600-143608800	Enhancers	HMEC	breast
29	chr6:143605600-143622000	Weak transcription	HepG2	liver
30	chr6:143605800-143606400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:143605800-143607000	Weak transcription	NH-A	brain
32	chr6:143605800-143607400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:143605800-143609400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr6:143606000-143606800	Strong transcription	Fetal Intestine Small	intestine
35	chr6:143606200-143606400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:143606200-143606400	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr6:143606200-143606400	Enhancers	Ovary	ovary
38	chr6:143606200-143606400	Enhancers	Rectal Smooth Muscle	rectum
39	chr6:143606200-143609400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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