Variant report

Variant	rs12206292
Chromosome Location	chr6:143557508-143557509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143511746..143514380-chr6:143555820..143557845,2	K562	blood:
2	chr6:143557083..143562017-chr6:143562858..143567253,5	K562	blood:

rs_ID	r²[population]
rs12205812	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12207891	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12213958	0.86[ASN][1000 genomes]
rs17591455	0.85[JPT][hapmap]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
3	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:143545600-143564000	Weak transcription	Right Atrium	heart
5	chr6:143546000-143576200	Weak transcription	HepG2	liver
6	chr6:143546200-143571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:143547800-143558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:143548000-143559400	Weak transcription	NHEK	skin
9	chr6:143550200-143570400	Weak transcription	Fetal Intestine Large	intestine
10	chr6:143550800-143559400	Weak transcription	K562	blood
11	chr6:143554200-143581400	Weak transcription	Psoas Muscle	Psoas
12	chr6:143554800-143558000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:143555000-143559400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:143555000-143559600	Weak transcription	Liver	Liver
15	chr6:143555400-143558000	Enhancers	NHDF-Ad	bronchial
16	chr6:143555400-143562000	Weak transcription	Ovary	ovary
17	chr6:143556000-143560000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:143556200-143565600	Weak transcription	HMEC	breast
19	chr6:143556400-143557600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:143556600-143557800	Strong transcription	Fetal Intestine Small	intestine
21	chr6:143557000-143557800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:143557200-143557600	Enhancers	Left Ventricle	heart
23	chr6:143557200-143557800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:143557200-143557800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:143557200-143557800	Enhancers	Fetal Muscle Trunk	muscle
26	chr6:143557200-143558000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:143557200-143558000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr6:143557400-143557600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:143557400-143557600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:143557400-143557600	ZNF genes & repeats	Lung	lung
31	chr6:143557400-143557800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:143557400-143558000	Enhancers	Skeletal Muscle Male	skeletal muscle

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