Variant report

Variant	rs7741127
Chromosome Location	chr6:34406260-34406261
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34396044..34398676-chr6:34403106..34407156,3	K562	blood:
2	chr6:34392652..34394309-chr6:34405730..34407583,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124614	Chromatin interaction
ENSG00000270800	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10484267	0.80[AMR][1000 genomes]
rs10484268	0.80[AMR][1000 genomes]
rs1057691	0.80[AMR][1000 genomes]
rs1060308	0.80[AMR][1000 genomes]
rs10648	0.80[AMR][1000 genomes]
rs1127084	0.80[AMR][1000 genomes]
rs1265	0.80[AMR][1000 genomes]
rs13466	0.80[AMR][1000 genomes]
rs16883137	0.80[AMR][1000 genomes]
rs16883475	0.80[AMR][1000 genomes]
rs17628946	0.80[AMR][1000 genomes]
rs17629180	0.80[AMR][1000 genomes]
rs17629270	0.80[AMR][1000 genomes]
rs17696583	0.80[AMR][1000 genomes]
rs17696774	0.80[AMR][1000 genomes]
rs17696829	0.80[AMR][1000 genomes]
rs1994923	0.80[AMR][1000 genomes]
rs206922	0.84[AMR][1000 genomes]
rs41269034	0.80[AMR][1000 genomes]
rs41269036	0.80[AMR][1000 genomes]
rs4713782	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55674397	0.80[AMR][1000 genomes]
rs55684754	0.80[AMR][1000 genomes]
rs55694290	0.80[AMR][1000 genomes]
rs55763242	0.80[AMR][1000 genomes]
rs55798596	0.82[AMR][1000 genomes]
rs55812200	0.80[AMR][1000 genomes]
rs55833185	0.82[AMR][1000 genomes]
rs55863933	0.80[AMR][1000 genomes]
rs55864834	0.82[AMR][1000 genomes]
rs56033036	0.80[AMR][1000 genomes]
rs56107559	0.80[AMR][1000 genomes]
rs56188036	0.80[AMR][1000 genomes]
rs56274913	0.80[AMR][1000 genomes]
rs56309550	0.80[AMR][1000 genomes]
rs56323997	0.82[AMR][1000 genomes]
rs56330729	0.82[AMR][1000 genomes]
rs6457775	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs875274	0.80[AMR][1000 genomes]
rs9368811	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7741127	NUDT3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34394200-34409200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:34394400-34433200	Weak transcription	Right Atrium	heart
3	chr6:34405400-34409200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:34405600-34409200	Weak transcription	Primary B cells from cord blood	blood

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