Variant report

Variant	rs9368811
Chromosome Location	chr6:34396461-34396462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34359009..34361090-chr6:34396390..34398373,2	K562	blood:
2	chr6:34391775..34394563-chr6:34394854..34397394,3	MCF-7	breast:
3	chr6:34396044..34398676-chr6:34403106..34407156,3	K562	blood:
4	chr6:34396387..34398472-chr6:34403252..34405821,2	K562	blood:

Variant related genes	Relation type
ENSG00000272325	Chromatin interaction
ENSG00000270800	Chromatin interaction
ENSG00000124614	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10484267	0.80[EUR][1000 genomes]
rs10484268	0.80[EUR][1000 genomes]
rs1057691	0.80[EUR][1000 genomes]
rs1060308	0.80[EUR][1000 genomes]
rs10648	0.80[EUR][1000 genomes]
rs1127084	0.80[EUR][1000 genomes]
rs1265	0.80[EUR][1000 genomes]
rs12654	0.80[EUR][1000 genomes]
rs13466	0.80[EUR][1000 genomes]
rs16883137	0.80[EUR][1000 genomes]
rs16883475	0.80[EUR][1000 genomes]
rs16883896	0.80[EUR][1000 genomes]
rs16888452	0.80[EUR][1000 genomes]
rs17628798	0.81[EUR][1000 genomes]
rs17628946	0.80[EUR][1000 genomes]
rs17629180	0.80[EUR][1000 genomes]
rs17629270	0.80[EUR][1000 genomes]
rs17696583	0.80[EUR][1000 genomes]
rs17696774	0.80[EUR][1000 genomes]
rs17696829	0.80[EUR][1000 genomes]
rs1994923	0.80[EUR][1000 genomes]
rs206922	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3798554	0.82[AMR][1000 genomes]
rs3798557	0.80[EUR][1000 genomes]
rs41269032	0.81[EUR][1000 genomes]
rs41269034	0.80[EUR][1000 genomes]
rs41269036	0.80[EUR][1000 genomes]
rs41269038	0.81[EUR][1000 genomes]
rs4713782	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55674397	0.80[EUR][1000 genomes]
rs55684754	0.80[EUR][1000 genomes]
rs55694290	0.81[EUR][1000 genomes]
rs55763242	0.80[EUR][1000 genomes]
rs55779010	0.80[EUR][1000 genomes]
rs55798596	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55812200	0.80[EUR][1000 genomes]
rs55833185	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55863933	0.80[EUR][1000 genomes]
rs55864834	0.80[AMR][1000 genomes]
rs56033036	0.80[EUR][1000 genomes]
rs56039915	0.80[EUR][1000 genomes]
rs56107559	0.80[EUR][1000 genomes]
rs56188036	0.80[EUR][1000 genomes]
rs56274913	0.80[EUR][1000 genomes]
rs56309550	0.80[EUR][1000 genomes]
rs56323997	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56330729	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6457775	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6911272	0.80[EUR][1000 genomes]
rs7738665	0.81[EUR][1000 genomes]
rs7741127	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7760373	0.80[EUR][1000 genomes]
rs875274	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9368811	NUDT3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34394200-34409200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:34394400-34396800	Weak transcription	HepG2	liver
3	chr6:34394400-34433200	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links